Variant report

Variant	rs574612320
Chromosome Location	chr15:77577250-77577251
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv869991	chr15:77545316-77578885	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	esv33934	chr15:77548764-77579524	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77520200-77578800	Weak transcription	Small Intestine	intestine
2	chr15:77528800-77579200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:77541800-77589800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:77542200-77580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:77544400-77581000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:77544600-77589200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:77559400-77578800	Weak transcription	Ovary	ovary
8	chr15:77559600-77578800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:77559800-77579400	Weak transcription	Brain Anterior Caudate	brain
10	chr15:77559800-77585200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:77562000-77580200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:77562200-77589600	Weak transcription	Primary T cells from cord blood	blood
13	chr15:77563400-77577400	Weak transcription	Fetal Kidney	kidney
14	chr15:77565400-77578800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:77567600-77580200	Weak transcription	Fetal Lung	lung
16	chr15:77568400-77578600	Weak transcription	Esophagus	oesophagus
17	chr15:77568800-77578000	Weak transcription	Thymus	Thymus
18	chr15:77570000-77579400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:77571800-77578800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:77571800-77579400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:77571800-77579600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:77571800-77585600	Weak transcription	Right Ventricle	heart
23	chr15:77572000-77578600	Weak transcription	Placenta	Placenta
24	chr15:77572000-77582000	Weak transcription	Left Ventricle	heart
25	chr15:77572200-77580000	Weak transcription	HSMMtube	muscle
26	chr15:77572600-77580800	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:77573000-77577800	Weak transcription	K562	blood
28	chr15:77573600-77578600	Weak transcription	Primary B cells from cord blood	blood
29	chr15:77573600-77580600	Weak transcription	Primary B cells from peripheral blood	blood
30	chr15:77573600-77589400	Weak transcription	Fetal Stomach	stomach
31	chr15:77574600-77580800	Weak transcription	Fetal Brain Male	brain
32	chr15:77574600-77585200	Weak transcription	Psoas Muscle	Psoas
33	chr15:77575000-77585400	Weak transcription	NH-A	brain
34	chr15:77575200-77577800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:77575400-77577600	Weak transcription	Brain Substantia Nigra	brain
36	chr15:77575400-77580400	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:77575400-77586000	Weak transcription	HepG2	liver
38	chr15:77575600-77579200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:77575600-77579400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr15:77575600-77580000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:77576000-77577600	Strong transcription	Dnd41	blood
42	chr15:77576000-77578000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:77576000-77578000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:77576200-77578200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:77576400-77577600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr15:77576400-77577800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:77576400-77577800	Weak transcription	Stomach Mucosa	stomach
48	chr15:77576400-77578000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr15:77576400-77578000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr15:77576400-77578000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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