Variant report

Variant	rs574664142
Chromosome Location	chr6:35437832-35437833
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:54366608..54368151-chr6:35435475..35437868,2	MCF-7	breast:
2	chr6:35226066..35229330-chr6:35434346..35438215,4	K562	blood:
3	chr6:35435945..35437939-chr6:35694170..35698146,4	MCF-7	breast:
4	chr20:46247769..46250041-chr6:35436696..35439352,2	MCF-7	breast:
5	chr6:35308405..35313609-chr6:35434054..35440248,12	K562	blood:
6	chr6:35260730..35269335-chr6:35433870..35444063,22	MCF-7	breast:
7	chr6:35434857..35438603-chr6:35692996..35696802,4	K562	blood:
8	chr6:35270811..35278072-chr6:35434777..35439344,8	MCF-7	breast:
9	chr6:35308378..35313609-chr6:35433550..35439145,12	K562	blood:
10	chr6:35334952..35336985-chr6:35437820..35439683,2	MCF-7	breast:
11	chr6:35309215..35314259-chr6:35432456..35439068,10	MCF-7	breast:
12	chr6:35415017..35416617-chr6:35436362..35437925,2	MCF-7	breast:
13	chr6:35437115..35437843-chr6:109415713..109416328,2	Hela-S3	cervix:
14	chr6:35434775..35437842-chr6:35701549..35705876,5	MCF-7	breast:
15	chr6:35418617..35424875-chr6:35434196..35438070,12	MCF-7	breast:
16	chr6:35226330..35228825-chr6:35434969..35437843,3	MCF-7	breast:
17	chr6:35360426..35363519-chr6:35436261..35438354,3	K562	blood:
18	chr6:35257372..35267692-chr6:35433856..35438688,25	K562	blood:
19	chr6:35415818..35424678-chr6:35432486..35440672,36	K562	blood:
20	chr6:35257372..35267871-chr6:35433266..35439192,25	K562	blood:
21	chr6:35436419..35438425-chr6:35888772..35891148,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157343	Chromatin interaction
ENSG00000183137	Chromatin interaction
ENSG00000080546	Chromatin interaction
ENSG00000112039	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000123388	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000096063	Chromatin interaction
ENSG00000065029	Chromatin interaction
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830641	chr6:35282534-35440603	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
2	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv885799	chr6:35378778-35442397	Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
4	nsv462908	chr6:35378778-35457396	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv602910	chr6:35378778-35457396	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
6	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
7	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
8	nsv965717	chr6:35437464-35438661	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35435200-35440200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35435600-35438800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:35435800-35439200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:35435800-35439200	Transcr. at gene 5' and 3'	NHLF	lung
5	chr6:35436200-35438000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
6	chr6:35436200-35438400	Transcr. at gene 5' and 3'	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:35436200-35438400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
8	chr6:35436200-35440400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:35436200-35440600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:35436400-35438400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:35436400-35439200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
12	chr6:35436400-35439200	Transcr. at gene 5' and 3'	A549	lung
13	chr6:35436400-35439200	Transcr. at gene 5' and 3'	Dnd41	blood
14	chr6:35436400-35439200	Transcr. at gene 5' and 3'	Osteobl	bone
15	chr6:35436400-35439400	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
16	chr6:35436400-35439400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
17	chr6:35436400-35439400	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
18	chr6:35436400-35440200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:35436400-35440200	Transcr. at gene 5' and 3'	NHEK	skin
20	chr6:35436400-35440600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
21	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
22	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
23	chr6:35436600-35438000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
24	chr6:35436600-35438200	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
25	chr6:35436600-35438400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:35436600-35438400	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr6:35436600-35438400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
28	chr6:35436600-35438800	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
29	chr6:35436600-35438800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:35436600-35438800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:35436600-35438800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:35436600-35439200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
33	chr6:35436600-35439200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:35436600-35439600	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
35	chr6:35436600-35439800	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
36	chr6:35436800-35438000	Flanking Active TSS	Fetal Brain Female	brain
37	chr6:35436800-35438200	Transcr. at gene 5' and 3'	Fetal Intestine Large	intestine
38	chr6:35436800-35438400	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
39	chr6:35436800-35438400	Transcr. at gene 5' and 3'	Esophagus	oesophagus
40	chr6:35436800-35438400	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
41	chr6:35436800-35439200	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
42	chr6:35436800-35439200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:35436800-35439200	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:35437000-35438000	Transcr. at gene 5' and 3'	Fetal Lung	lung
45	chr6:35437000-35438000	Transcr. at gene 5' and 3'	Thymus	Thymus
46	chr6:35437000-35438200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
47	chr6:35437000-35439200	Transcr. at gene 5' and 3'	NH-A	brain
48	chr6:35437000-35439800	Transcr. at gene 5' and 3'	Hela-S3	cervix
49	chr6:35437000-35440800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
50	chr6:35437200-35438000	Transcr. at gene 5' and 3'	Cortex derived primary cultured neurospheres	brain

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