Variant report

Variant	rs57469669
Chromosome Location	chr15:59571262-59571263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59563059..59564957-chr15:59570722..59573301,2	K562	blood:
2	chr15:59568673..59571814-chr15:59663413..59666270,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157470	Chromatin interaction
ENSG00000259771	Chromatin interaction
ENSG00000157483	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55851003	1.00[AMR][1000 genomes]
rs56192171	1.00[AMR][1000 genomes]
rs74020307	1.00[AMR][1000 genomes]
rs74020308	1.00[AMR][1000 genomes]
rs74020310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59524600-59574600	Weak transcription	Lung	lung
2	chr15:59525200-59582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:59544600-59582400	Weak transcription	Primary B cells from cord blood	blood
4	chr15:59547400-59587000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:59550000-59571600	Weak transcription	Esophagus	oesophagus
6	chr15:59550600-59574600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:59563200-59573200	Enhancers	Fetal Intestine Small	intestine
8	chr15:59563600-59572000	Enhancers	Fetal Intestine Large	intestine
9	chr15:59564200-59581800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:59564600-59571600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:59564600-59574600	Weak transcription	Ovary	ovary
12	chr15:59564800-59571400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:59565400-59571400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:59566200-59572000	Enhancers	HMEC	breast
15	chr15:59566400-59572200	Enhancers	Brain Hippocampus Middle	brain
16	chr15:59566800-59574600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:59567000-59574600	Weak transcription	Psoas Muscle	Psoas
18	chr15:59567000-59574800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:59567000-59576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:59567000-59578000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:59567000-59582400	Weak transcription	NHLF	lung
22	chr15:59567200-59573000	Weak transcription	Osteobl	bone
23	chr15:59567200-59575000	Weak transcription	HSMM	muscle
24	chr15:59567200-59582200	Weak transcription	HSMMtube	muscle
25	chr15:59567200-59582600	Weak transcription	NH-A	brain
26	chr15:59568000-59573200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:59568400-59571600	Weak transcription	Left Ventricle	heart
28	chr15:59568400-59571800	Weak transcription	Spleen	Spleen
29	chr15:59568400-59574800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:59568400-59574800	Weak transcription	Small Intestine	intestine
31	chr15:59568800-59572000	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:59568800-59574800	Weak transcription	Colonic Mucosa	Colon
33	chr15:59569000-59572000	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr15:59569000-59574800	Weak transcription	Gastric	stomach
35	chr15:59569200-59571400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:59569200-59573000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:59569200-59573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:59569200-59574400	Weak transcription	Placenta	Placenta
39	chr15:59569200-59584600	Weak transcription	Right Atrium	heart
40	chr15:59569200-59586800	Weak transcription	Pancreas	Pancrea
41	chr15:59569400-59574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr15:59569400-59574200	Enhancers	HepG2	liver
43	chr15:59569400-59574600	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr15:59569400-59575200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:59569600-59576200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:59569800-59571800	Enhancers	Brain Anterior Caudate	brain
47	chr15:59570000-59572000	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr15:59570000-59572000	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr15:59570000-59572400	Enhancers	Brain Angular Gyrus	brain
50	chr15:59570200-59571600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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