Variant report

Variant	rs57474825
Chromosome Location	chr15:100018438-100018439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100018316..100021030-chr15:100104572..100106677,2	MCF-7	breast:
2	chr15:99976307..99978594-chr15:100018036..100019822,2	MCF-7	breast:
3	chr15:99981781..99983657-chr15:100018041..100019744,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28647344	1.00[AMR][1000 genomes]
rs28669819	1.00[AMR][1000 genomes]
rs28719672	1.00[AMR][1000 genomes]
rs56984909	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59449679	1.00[AMR][1000 genomes]
rs60083487	1.00[AMR][1000 genomes]
rs60105964	1.00[AMR][1000 genomes]
rs60683023	1.00[AMR][1000 genomes]
rs60713531	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100008200-100020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:100012400-100018600	Enhancers	Spleen	Spleen
3	chr15:100012400-100018800	Enhancers	Right Atrium	heart
4	chr15:100012600-100018600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr15:100012600-100019000	Enhancers	Fetal Heart	heart
6	chr15:100012800-100018800	Enhancers	Fetal Lung	lung
7	chr15:100013000-100018600	Enhancers	Right Ventricle	heart
8	chr15:100013000-100018800	Enhancers	Fetal Muscle Trunk	muscle
9	chr15:100013000-100019400	Enhancers	Fetal Thymus	thymus
10	chr15:100013200-100019000	Enhancers	Fetal Muscle Leg	muscle
11	chr15:100014000-100018600	Enhancers	HSMMtube	muscle
12	chr15:100014000-100019200	Enhancers	Fetal Stomach	stomach
13	chr15:100014800-100018800	Enhancers	Left Ventricle	heart
14	chr15:100014800-100020200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr15:100014800-100026800	Weak transcription	Aorta	Aorta
16	chr15:100015200-100018600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:100015600-100018600	Enhancers	NHDF-Ad	bronchial
18	chr15:100015600-100018800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr15:100015800-100019000	Enhancers	Dnd41	blood
20	chr15:100016000-100019000	Enhancers	Primary B cells from cord blood	blood
21	chr15:100016000-100019000	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:100016000-100019000	Enhancers	Thymus	Thymus
23	chr15:100016200-100019000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:100016200-100019600	Enhancers	Primary hematopoietic stem cells	blood
25	chr15:100016400-100018600	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:100016400-100018800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr15:100016400-100018800	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr15:100016600-100018600	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr15:100016600-100018800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:100016600-100018800	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr15:100016800-100018600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr15:100017000-100018600	Enhancers	Brain Anterior Caudate	brain
33	chr15:100017200-100019200	Enhancers	Primary T cells from cord blood	blood
34	chr15:100017200-100019400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr15:100017400-100018600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:100017400-100018800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:100017600-100018600	Enhancers	Brain Hippocampus Middle	brain
38	chr15:100018000-100018600	Enhancers	Stomach Smooth Muscle	stomach
39	chr15:100018000-100018600	Bivalent Enhancer	HepG2	liver
40	chr15:100018000-100026000	Weak transcription	A549	lung
41	chr15:100018200-100018800	Weak transcription	Brain Angular Gyrus	brain
42	chr15:100018200-100018800	Enhancers	Brain Substantia Nigra	brain
43	chr15:100018200-100019400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr15:100018200-100020400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:100018200-100026000	Weak transcription	Stomach Mucosa	stomach
46	chr15:100018400-100020400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr15:100018400-100022400	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr15:100018400-100024600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:100018400-100024600	Weak transcription	Lung	lung
50	chr15:100018400-100025800	Weak transcription	Duodenum Smooth Muscle	Duodenum

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