Variant report

Variant	rs60713531
Chromosome Location	chr15:100043917-100043918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100041461..100043995-chr15:100049770..100051329,2	K562	blood:
2	chr15:100041793..100044537-chr15:100052151..100054135,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28647344	1.00[AMR][1000 genomes]
rs28669819	1.00[AMR][1000 genomes]
rs28719672	1.00[AMR][1000 genomes]
rs56984909	1.00[AMR][1000 genomes]
rs57474825	1.00[AMR][1000 genomes]
rs59449679	1.00[AMR][1000 genomes]
rs60083487	1.00[AMR][1000 genomes]
rs60105964	1.00[AMR][1000 genomes]
rs60683023	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100035800-100054400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:100036800-100044800	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:100036800-100044800	Weak transcription	Esophagus	oesophagus
4	chr15:100036800-100045000	Weak transcription	Right Ventricle	heart
5	chr15:100036800-100047400	Weak transcription	Gastric	stomach
6	chr15:100036800-100049000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr15:100036800-100049800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:100038400-100053200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:100039600-100052000	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:100040000-100044400	Enhancers	Spleen	Spleen
11	chr15:100040000-100045600	Enhancers	Primary B cells from cord blood	blood
12	chr15:100040200-100044600	Weak transcription	Right Atrium	heart
13	chr15:100040600-100046000	Enhancers	Fetal Thymus	thymus
14	chr15:100041000-100044000	Weak transcription	Adipose Nuclei	Adipose
15	chr15:100041400-100044000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr15:100041400-100046000	Flanking Active TSS	GM12878-XiMat	blood
17	chr15:100041600-100050000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:100041800-100045600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:100042200-100044000	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr15:100042200-100046000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr15:100042200-100052000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:100042400-100044000	Enhancers	Lung	lung
23	chr15:100042600-100044400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr15:100043000-100044200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:100043200-100044800	Enhancers	Primary T cells from cord blood	blood
26	chr15:100043200-100045200	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:100043400-100045200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:100043600-100044000	Bivalent Enhancer	Fetal Muscle Leg	muscle
29	chr15:100043600-100045000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr15:100043600-100045600	Enhancers	Placenta	Placenta
31	chr15:100043600-100047400	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr15:100043800-100044600	Weak transcription	Left Ventricle	heart
33	chr15:100043800-100045000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links