Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10428025	0.86[ASN][1000 genomes]
rs12166447	0.86[ASN][1000 genomes]
rs12170920	0.86[ASN][1000 genomes]
rs5749115	0.86[ASN][1000 genomes]
rs5749117	0.86[ASN][1000 genomes]
rs5753168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs5753178	0.86[ASN][1000 genomes]
rs5753180	0.86[ASN][1000 genomes]
rs5753181	0.86[ASN][1000 genomes]
rs5753183	0.86[ASN][1000 genomes]
rs62226963	0.86[ASN][1000 genomes]
rs6518696	0.83[ASN][1000 genomes]
rs6518697	0.83[ASN][1000 genomes]
rs7289983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8135119	0.83[ASN][1000 genomes]
rs8138701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8138980	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs886618	0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9619116	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9621003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9621016	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30872800-30881400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:30874600-30894000	Weak transcription	Right Atrium	heart
3	chr22:30878000-30881800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr22:30878200-30881200	Weak transcription	Osteobl	bone
5	chr22:30878400-30879400	Weak transcription	Brain Anterior Caudate	brain

Quick Search: