Variant report

Variant	rs57494402
Chromosome Location	chr11:108901778-108901779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs55749546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856030	1.00[AMR][1000 genomes]
rs56083901	0.95[AFR][1000 genomes]
rs59148292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61484998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558621	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108894200-108903800	Weak transcription	Osteobl	bone
2	chr11:108899000-108904200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:108901000-108904000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:108901000-108908800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:108901400-108902000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:108901600-108901800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:108901600-108902000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:108901600-108902000	Enhancers	HMEC	breast
9	chr11:108901600-108902200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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