Variant report

Variant	rs59148292
Chromosome Location	chr11:108917373-108917374
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55749546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55856030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57494402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61484998	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040650	chr11:108859584-109174553	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv898390	chr11:108893765-109003536	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1815918	chr11:108900487-108948487	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108907400-108917400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108915600-108922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:108916800-108917600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:108917000-108917600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:108917200-108918000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:108917200-108918400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr11:108917200-108919400	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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