Variant report

Variant	rs5749452
Chromosome Location	chr22:32891690-32891691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32879087..32881593-chr22:32888783..32892054,3	K562	blood:
2	22:32889404-32895878..22:33262063-33266567	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

rs_ID	r²[population]
rs12628767	0.91[CEU][hapmap]
rs3761435	0.91[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs5994573	0.91[CEU][hapmap]
rs72620410	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7292178	0.91[CEU][hapmap];0.81[TSI][hapmap]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32872200-32898200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32872200-32898400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32872200-32899600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:32873000-32898000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr22:32874800-32896000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32874800-32896400	Strong transcription	Dnd41	blood
7	chr22:32876000-32896400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr22:32876600-32894800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr22:32877000-32896400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr22:32877200-32898000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr22:32877800-32895400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr22:32878200-32896600	Strong transcription	Primary B cells from cord blood	blood
13	chr22:32878800-32892000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr22:32878800-32895200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr22:32878800-32895200	Strong transcription	Fetal Muscle Leg	muscle
16	chr22:32879200-32895400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr22:32879200-32896200	Strong transcription	Left Ventricle	heart
18	chr22:32879400-32895200	Strong transcription	HepG2	liver
19	chr22:32879400-32896000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr22:32879400-32896200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr22:32879400-32896600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr22:32879600-32894800	Strong transcription	Fetal Thymus	thymus
23	chr22:32879600-32896000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr22:32879600-32896000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr22:32879600-32896600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr22:32879800-32895200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr22:32879800-32895600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr22:32879800-32896000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr22:32879800-32896400	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr22:32879800-32896400	Strong transcription	GM12878-XiMat	blood
31	chr22:32879800-32896600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr22:32880000-32893800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr22:32880000-32894800	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr22:32880000-32895000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr22:32880000-32895200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr22:32880000-32895400	Strong transcription	Stomach Smooth Muscle	stomach
37	chr22:32880000-32895800	Strong transcription	Placenta	Placenta
38	chr22:32880000-32896000	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr22:32880000-32896200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr22:32880000-32896200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr22:32880000-32896200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr22:32880000-32896400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr22:32880000-32896600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr22:32880200-32896400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr22:32880600-32895200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr22:32881000-32894800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr22:32881000-32896200	Strong transcription	HSMM	muscle
48	chr22:32882000-32896400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr22:32882200-32896600	Strong transcription	Osteobl	bone
50	chr22:32882400-32895200	Strong transcription	Muscle Satellite Cultured Cells	--

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