Variant report

Variant	rs574957300
Chromosome Location	chr8:99683004-99683005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99673800-99686400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:99676200-99738200	Weak transcription	Fetal Kidney	kidney
3	chr8:99676400-99700000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:99677800-99685600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:99680600-99686000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:99680600-99689800	Weak transcription	NH-A	brain
7	chr8:99680600-99692400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:99680800-99683600	Weak transcription	Fetal Heart	heart
9	chr8:99680800-99684400	Weak transcription	HSMMtube	muscle
10	chr8:99681200-99692400	Weak transcription	NHDF-Ad	bronchial
11	chr8:99681800-99683400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
12	chr8:99681800-99683600	ZNF genes & repeats	GM12878-XiMat	blood
13	chr8:99681800-99684400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:99682000-99683800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr8:99682000-99684000	ZNF genes & repeats	Fetal Muscle Leg	muscle
16	chr8:99682000-99684200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:99682200-99683200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:99682200-99683600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr8:99682200-99684000	ZNF genes & repeats	Fetal Intestine Small	intestine
20	chr8:99682200-99684600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr8:99682400-99683200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
22	chr8:99682400-99683200	ZNF genes & repeats	Ovary	ovary
23	chr8:99682400-99683400	ZNF genes & repeats	Aorta	Aorta
24	chr8:99682400-99683400	ZNF genes & repeats	Fetal Stomach	stomach
25	chr8:99682400-99683400	ZNF genes & repeats	Lung	lung
26	chr8:99682400-99683400	ZNF genes & repeats	Pancreas	Pancrea
27	chr8:99682400-99683600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr8:99682400-99683800	ZNF genes & repeats	Dnd41	blood
29	chr8:99682400-99684000	ZNF genes & repeats	Fetal Intestine Large	intestine
30	chr8:99682400-99684200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr8:99682400-99684400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:99682400-99684400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr8:99682400-99684400	ZNF genes & repeats	Liver	Liver
34	chr8:99682600-99683200	ZNF genes & repeats	Brain Substantia Nigra	brain
35	chr8:99682600-99683200	ZNF genes & repeats	NHLF	lung
36	chr8:99682600-99683400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:99682600-99683400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
38	chr8:99682600-99684000	ZNF genes & repeats	Fetal Lung	lung
39	chr8:99682600-99684200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:99682800-99683200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:99682800-99683200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:99682800-99683200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
43	chr8:99682800-99683200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:99682800-99683200	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr8:99682800-99683200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
46	chr8:99682800-99683400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr8:99682800-99683400	ZNF genes & repeats	Placenta	Placenta
48	chr8:99682800-99683400	ZNF genes & repeats	Left Ventricle	heart
49	chr8:99682800-99683400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr8:99682800-99683600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon

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