Variant report

Variant	rs575058520
Chromosome Location	chr11:51413669-51413670
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:51413644-51413694	GM12892	blood:	n/a
2	chr11:51413644-51413694	NHDF-neo	bronchial:	n/a
3	chr11:51413644-51413694	HEEpiC	esophagus:	n/a
4	chr11:51413644-51413694	K562	blood:	n/a
5	chr11:51413644-51413694	SK-N-SH	brain:	n/a
6	chr11:51413644-51413694	H1-hESC	embryonic stem cell:	embryo
7	chr11:51413644-51413694	NT2-D1	testis:	n/a
8	chr11:51413644-51413694	HUVEC	blood vessel:	n/a
9	chr11:51413644-51413694	HRPEpiC	eye:	n/a
10	chr11:51413644-51413694	AG10803	skin:	n/a
11	chr11:51413644-51413694	HCM	heart:	n/a
12	chr11:51413644-51413694	CMK	blood:	n/a
13	chr11:51413644-51413694	SAEC	small airway:	n/a
14	chr11:51413644-51413694	AG09309	skin:	n/a
15	chr11:51413644-51413694	RPTEC	kidney:	n/a
16	chr11:51413644-51413694	HRCEpiC	kidney:	n/a
17	chr11:51413644-51413694	HCPEpiC	choroid plexus:	n/a
18	chr11:51413644-51413694	PANC-1	pancreas:	n/a
19	chr11:51413644-51413694	Hela-S3	cervix:	n/a
20	chr11:51413644-51413694	PFSK-1	brain:	n/a
21	chr11:51413644-51413694	MCF10A-Er-Src	breast:	n/a
22	chr11:51413644-51413694	GM12878	blood:	n/a
23	chr11:51413644-51413694	A549	lung:	n/a
24	chr11:51413644-51413694	Hepatocyte	liver:	n/a
25	chr11:51413644-51413694	Caco-2	colon:	n/a
26	chr11:51413644-51413694	GM06990	blood:	n/a
27	chr11:51413644-51413694	HAEpiC	amniotic membrane:	n/a
28	chr11:51413644-51413694	SK-N-SH_RA	brain:	n/a
29	chr11:51413644-51413694	HL-60	blood:	n/a
30	chr11:51413644-51413694	HMEC	breast:	n/a
31	chr11:51413644-51413694	AG04449	skin:	fetal
32	chr11:51413644-51413694	BJ	skin:	n/a
33	chr11:51413644-51413694	T-47D	breast:	n/a
34	chr11:51413644-51413694	ProgFib	skin:	n/a
35	chr11:51413644-51413694	IMR90	lung:	fetal
36	chr11:51413644-51413694	PrEC	prostate:	n/a
37	chr11:51413644-51413694	U87	brain:	n/a
38	chr11:51413644-51413694	BE2_C	brain:	n/a
39	chr11:51413644-51413694	AG09319	gingival:	n/a
40	chr11:51413644-51413694	Jurkat	blood:	n/a
41	chr11:51413644-51413694	GM12891	blood:	n/a
42	chr11:51413644-51413694	LNCaP	prostate:	n/a
43	chr11:51413644-51413694	ovcar-3	ovarian:	n/a
44	chr11:51413644-51413694	NB4	blood:	n/a
45	chr11:51413644-51413694	SK-N-MC	brain:	n/a
46	chr11:51413644-51413694	AoSMC	blood vessel:	n/a
47	chr11:51413644-51413694	HepG2	liver:	n/a
48	chr11:51413644-51413694	HEK293	kidney:	embryo
49	chr11:51413644-51413694	NHBE	bronchial:	n/a
50	chr11:51413644-51413694	ECC-1	luminal epithelium:	n/a

No data

Variant related genes	Relation type
OR4A5	CpG island

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809768	chr11:50566719-51426645	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1046048	chr11:50637245-51564415	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv1836242	chr11:50642550-51446535	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv897572	chr11:50730482-51456554	Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv897573	chr11:50730482-51538376	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv897574	chr11:50730482-51559259	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv897575	chr11:50730482-51579085	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv1053373	chr11:51095992-51564415	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv554427	chr11:51095992-51580203	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv897582	chr11:51127089-51579085	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv1046059	chr11:51176562-51564415	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1036886	chr11:51183682-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
13	esv1806314	chr11:51183814-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
14	esv1793228	chr11:51183814-51446535	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	5 gene(s)	inside rSNPs	diseases
15	nsv554434	chr11:51183814-51593877	ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv554440	chr11:51187354-51578097	ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	esv2751029	chr11:51192824-51563636	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
18	esv2755032	chr11:51192870-51429291	ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island	4 gene(s)	inside rSNPs	diseases
19	nsv1044063	chr11:51192870-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
20	nsv1051064	chr11:51195051-51500015	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv1036334	chr11:51195051-51551394	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
22	nsv1045774	chr11:51205141-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1048401	chr11:51215424-51564415	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv1054282	chr11:51228076-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
25	nsv1040974	chr11:51267021-51564415	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
26	nsv897586	chr11:51314773-51456554	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv1048850	chr11:51337062-51564415	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
28	esv1809643	chr11:51347668-51426645	ZNF genes & repeats Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	esv1814852	chr11:51347668-51426645	ZNF genes & repeats Enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
30	nsv554487	chr11:51347668-51435002	Enhancers ZNF genes & repeats	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
31	esv1849593	chr11:51347668-51483139	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
32	nsv1041340	chr11:51357233-51564415	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
33	nsv554587	chr11:51362490-51581931	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
34	nsv554588	chr11:51365437-51582380	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv554589	chr11:51365437-51593877	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
36	nsv467884	chr11:51372036-51529002	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
37	nsv467885	chr11:51372036-51529002	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
38	nsv554590	chr11:51372036-51529002	Enhancers Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
39	nsv554591	chr11:51372036-51591253	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
40	nsv1048422	chr11:51375310-51564415	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
41	nsv971946	chr11:51378016-51458657	Weak transcription Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	n/a
42	nsv832151	chr11:51378059-51565349	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases
43	nsv975921	chr11:51411480-51451944	Enhancers	TF binding region CpG island	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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