Variant report
Variant | rs57506135 |
---|---|
Chromosome Location | chr14:82092098-82092099 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:20)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:20 , 50 per page) page:
1
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000258977 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11846543 | 1.00[EUR][1000 genomes] |
rs11849848 | 1.00[EUR][1000 genomes] |
rs11851708 | 1.00[EUR][1000 genomes] |
rs11851769 | 1.00[EUR][1000 genomes] |
rs11851776 | 1.00[EUR][1000 genomes] |
rs17115917 | 1.00[EUR][1000 genomes] |
rs56171233 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs57578871 | 1.00[EUR][1000 genomes] |
rs59877625 | 1.00[EUR][1000 genomes] |
rs59911720 | 1.00[EUR][1000 genomes] |
rs6574682 | 1.00[EUR][1000 genomes] |
rs7146571 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7148848 | 1.00[EUR][1000 genomes] |
rs7154704 | 1.00[EUR][1000 genomes] |
rs7156396 | 1.00[EUR][1000 genomes] |
rs7156980 | 1.00[EUR][1000 genomes] |
rs8011500 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs8022831 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1047694 | chr14:81831147-82534026 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
2 | nsv542145 | chr14:81831147-82534026 | Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
3 | nsv565299 | chr14:81983027-82586324 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
4 | nsv1052666 | chr14:82069162-83028382 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
5 | nsv902121 | chr14:82075469-82146538 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:82088400-82095600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |