Variant report

Variant	rs7156396
Chromosome Location	chr14:82105639-82105640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11846543	1.00[EUR][1000 genomes]
rs11849848	1.00[EUR][1000 genomes]
rs11851708	1.00[EUR][1000 genomes]
rs11851769	1.00[EUR][1000 genomes]
rs11851776	1.00[EUR][1000 genomes]
rs17115917	1.00[EUR][1000 genomes]
rs56171233	1.00[EUR][1000 genomes]
rs57506135	1.00[EUR][1000 genomes]
rs57578871	1.00[EUR][1000 genomes]
rs59877625	1.00[EUR][1000 genomes]
rs59911720	1.00[EUR][1000 genomes]
rs6574682	1.00[EUR][1000 genomes]
rs7146571	1.00[EUR][1000 genomes]
rs7148848	1.00[EUR][1000 genomes]
rs7154704	1.00[EUR][1000 genomes]
rs7156980	1.00[EUR][1000 genomes]
rs8011500	1.00[EUR][1000 genomes]
rs8022831	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv902121	chr14:82075469-82146538	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82104600-82106600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:82105200-82105800	Enhancers	Brain Hippocampus Middle	brain
3	chr14:82105400-82105800	Enhancers	Brain Germinal Matrix	brain
4	chr14:82105400-82106000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:82105400-82106200	Enhancers	Ovary	ovary
6	chr14:82105600-82105800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:82105600-82106000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:82105600-82106000	Enhancers	Pancreas	Pancrea
9	chr14:82105600-82106000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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