Variant report

Variant	rs57512127
Chromosome Location	chr6:140727036-140727037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55763383	0.95[AFR][1000 genomes]
rs56066126	1.00[AFR][1000 genomes]
rs56283721	0.95[AFR][1000 genomes]
rs57349800	0.95[AFR][1000 genomes]
rs58217469	1.00[AFR][1000 genomes]
rs58490042	1.00[AFR][1000 genomes]
rs59212774	0.90[AFR][1000 genomes]
rs59790631	1.00[AFR][1000 genomes]
rs60637613	1.00[AFR][1000 genomes]
rs73776161	0.86[AFR][1000 genomes]
rs73776167	0.86[AFR][1000 genomes]
rs73776168	0.95[AFR][1000 genomes]
rs73776170	0.86[AFR][1000 genomes]
rs73776171	0.86[AFR][1000 genomes]
rs73776172	1.00[AFR][1000 genomes]
rs73776173	0.90[AFR][1000 genomes]
rs73777319	1.00[AFR][1000 genomes]
rs73777320	1.00[AFR][1000 genomes]
rs73777321	1.00[AFR][1000 genomes]
rs73777322	1.00[AFR][1000 genomes]
rs73777323	1.00[AFR][1000 genomes]
rs73777324	1.00[AFR][1000 genomes]
rs73777326	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1015293	chr6:140544956-140798437	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv817390	chr6:140558103-141166039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv432965	chr6:140692307-140866307	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604767	chr6:140701423-140816108	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886694	chr6:140701423-141001420	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140727000-140727800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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