Variant report

Variant	rs57522409
Chromosome Location	chr3:150238876-150238877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10935799	1.00[AMR][1000 genomes]
rs28420602	1.00[AMR][1000 genomes]
rs28432951	1.00[AMR][1000 genomes]
rs28592750	1.00[AMR][1000 genomes]
rs58493383	1.00[AMR][1000 genomes]
rs58823268	1.00[AMR][1000 genomes]
rs60875454	1.00[AMR][1000 genomes]
rs61734436	1.00[AMR][1000 genomes]
rs6440674	1.00[AMR][1000 genomes]
rs6440675	1.00[AMR][1000 genomes]
rs7624827	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150235400-150256600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:150237800-150239000	Active TSS	A549	lung
3	chr3:150238000-150239000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:150238200-150239000	Active TSS	Ovary	ovary
5	chr3:150238400-150240000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:150238600-150239600	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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