Variant report

Variant	rs7624827
Chromosome Location	chr3:150185373-150185374
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150183043..150184831-chr3:150184961..150187685,2	MCF-7	breast:
2	chr3:150062933..150064982-chr3:150184137..150186195,2	K562	blood:
3	chr3:150185308..150188037-chr3:150190947..150194724,4	K562	blood:
4	chr3:150185308..150187363-chr3:150191883..150194072,2	K562	blood:
5	chr3:150172995..150175768-chr3:150182728..150185443,2	MCF-7	breast:
6	chr3:150184544..150186408-chr3:150206634..150209384,2	K562	blood:
7	chr3:150148239..150149785-chr3:150183660..150186457,2	K562	blood:

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10935799	1.00[AMR][1000 genomes]
rs28420602	1.00[AMR][1000 genomes]
rs28432951	1.00[AMR][1000 genomes]
rs28592750	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57522409	1.00[AMR][1000 genomes]
rs58493383	1.00[AMR][1000 genomes]
rs58823268	1.00[AMR][1000 genomes]
rs60875454	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734436	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440674	1.00[AMR][1000 genomes]
rs6440675	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877645	chr3:150103135-150212698	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150165600-150187200	Weak transcription	Small Intestine	intestine
2	chr3:150166000-150186200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:150166400-150185600	Weak transcription	Lung	lung
4	chr3:150172600-150191600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:150173800-150186400	Weak transcription	Colonic Mucosa	Colon
6	chr3:150174600-150186400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:150176600-150186400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:150176600-150187000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:150176800-150186400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:150176800-150186800	Weak transcription	Primary T cells from cord blood	blood
11	chr3:150176800-150187000	Weak transcription	Fetal Intestine Large	intestine
12	chr3:150176800-150187000	Weak transcription	Left Ventricle	heart
13	chr3:150176800-150187000	Weak transcription	Pancreas	Pancrea
14	chr3:150176800-150187000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr3:150176800-150187200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:150176800-150187200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:150176800-150187200	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:150176800-150187200	Weak transcription	Right Ventricle	heart
19	chr3:150176800-150187200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:150176800-150187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:150176800-150187400	Weak transcription	Thymus	Thymus
22	chr3:150176800-150187600	Weak transcription	Esophagus	oesophagus
23	chr3:150176800-150187600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:150177000-150200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:150177200-150186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:150177200-150186400	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr3:150177200-150187200	Weak transcription	Colon Smooth Muscle	Colon
28	chr3:150177400-150186400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:150177400-150187600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:150177600-150186000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:150177600-150186400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:150177600-150186400	Weak transcription	Placenta	Placenta
33	chr3:150177800-150185800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:150177800-150185800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:150178200-150186400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:150178200-150186400	Weak transcription	Hela-S3	cervix
37	chr3:150178400-150185400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:150178800-150186200	Weak transcription	NHLF	lung
39	chr3:150179000-150187000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr3:150179000-150187000	Weak transcription	HSMMtube	muscle
41	chr3:150179000-150187000	Weak transcription	Osteobl	bone
42	chr3:150179000-150187200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:150179000-150187600	Weak transcription	Fetal Thymus	thymus
44	chr3:150179200-150187200	Weak transcription	Aorta	Aorta
45	chr3:150179200-150187200	Weak transcription	Stomach Mucosa	stomach
46	chr3:150179200-150187400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr3:150179200-150201000	Weak transcription	Fetal Lung	lung
48	chr3:150179400-150186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:150180000-150192600	Weak transcription	Fetal Kidney	kidney
50	chr3:150181200-150185400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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