Variant report

Variant	rs575228334
Chromosome Location	chr6:127669993-127669994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:127668521..127671464-chr6:127672769..127675041,2	MCF-7	breast:
2	chr6:127669193..127671594-chr6:127672805..127674451,2	MCF-7	breast:
3	chr6:127587591..127589201-chr6:127668421..127670620,2	K562	blood:

Variant related genes	Relation type
ENSG00000118518	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604641	chr6:127657099-127719062	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3434083	chr6:127665998-127670132	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3363062	chr6:127666269-127670132	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3379735	chr6:127666283-127670349	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv965762	chr6:127669294-127698325	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127665800-127670000	Weak transcription	Esophagus	oesophagus
2	chr6:127665800-127670800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:127665800-127671200	Weak transcription	Right Ventricle	heart
4	chr6:127665800-127671800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr6:127665800-127672400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:127666000-127670000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:127666000-127670000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:127666000-127670400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:127666000-127671400	Weak transcription	Fetal Lung	lung
10	chr6:127666000-127672400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:127666000-127679200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:127666000-127704000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:127666200-127671800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:127666200-127673400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:127666200-127676800	Weak transcription	Right Atrium	heart
16	chr6:127666200-127687000	Weak transcription	HSMM	muscle
17	chr6:127666400-127670400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:127666400-127670400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:127666600-127670400	Weak transcription	Dnd41	blood
20	chr6:127667000-127671200	Weak transcription	K562	blood
21	chr6:127667200-127670600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:127667600-127676200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:127668000-127673400	Weak transcription	Primary B cells from cord blood	blood
24	chr6:127668800-127675800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:127669400-127670200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:127669400-127670200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:127669400-127670800	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr6:127669400-127671800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:127669600-127670000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:127669600-127670000	Enhancers	Adipose Nuclei	Adipose
31	chr6:127669600-127670000	Strong transcription	Gastric	stomach
32	chr6:127669600-127670600	Enhancers	Lung	lung
33	chr6:127669800-127670800	ZNF genes & repeats	Fetal Muscle Leg	muscle
34	chr6:127669800-127673200	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links