Variant report
| Variant | rs57522883 |
|---|---|
| Chromosome Location | chr7:116996398-116996399 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000237870 | Chromatin interaction |
| ENSG00000135269 | Chromatin interaction |
| ENSG00000105971 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs57916446 | 1.00[AFR][1000 genomes] |
| rs58698627 | 1.00[AFR][1000 genomes] |
| rs73482656 | 1.00[AFR][1000 genomes] |
| rs73484603 | 1.00[AFR][1000 genomes] |
| rs73484679 | 1.00[AFR][1000 genomes] |
| rs73486725 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608256 | chr7:116928371-117040117 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
