Variant report

Variant	rs73484679
Chromosome Location	chr7:117153585-117153586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57522883	1.00[AFR][1000 genomes]
rs57916446	1.00[AFR][1000 genomes]
rs58698627	1.00[AFR][1000 genomes]
rs73482656	1.00[AFR][1000 genomes]
rs73484603	1.00[AFR][1000 genomes]
rs73486725	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117150400-117153800	Strong transcription	Duodenum Mucosa	Duodenum
2	chr7:117151000-117154400	Strong transcription	Fetal Intestine Large	intestine
3	chr7:117151000-117154400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117151200-117154400	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr7:117151800-117172600	Weak transcription	Pancreas	Pancrea
6	chr7:117152600-117154000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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