Variant report
| Variant | rs5753592 |
|---|---|
| Chromosome Location | chr22:31785719-31785720 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:31784063..31789675-chr22:31793262..31796684,7 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000185721 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12627941 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2267169 | 0.86[EUR][1000 genomes] |
| rs2267170 | 0.86[EUR][1000 genomes] |
| rs2283880 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs28514306 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4820952 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4820964 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5749254 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5749260 | 1.00[EUR][1000 genomes] |
| rs5753531 | 0.84[EUR][1000 genomes] |
| rs5753559 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs5753595 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs5753604 | 0.95[AFR][1000 genomes] |
| rs58315696 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72617294 | 0.91[EUR][1000 genomes] |
| rs72617295 | 0.91[EUR][1000 genomes] |
| rs72617298 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834176 | chr22:31682426-31864701 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
| 2 | esv1816779 | chr22:31743711-31797094 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
