Variant report

Variant	rs28514306
Chromosome Location	chr22:31747831-31747832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31746827..31749730-chr22:31771450..31774509,3	MCF-7	breast:
2	chr17:61043432..61045215-chr22:31745449..31748247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263931	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1005624	0.92[ASN][1000 genomes]
rs1034587	0.80[ASN][1000 genomes]
rs10428007	0.82[ASN][1000 genomes]
rs12627941	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17220369	0.82[ASN][1000 genomes]
rs2239905	0.84[ASN][1000 genomes]
rs2239906	0.84[ASN][1000 genomes]
rs2267169	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2267170	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2267171	0.82[ASN][1000 genomes]
rs2283878	0.82[ASN][1000 genomes]
rs2283880	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4820952	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4820964	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4820965	0.89[ASN][1000 genomes]
rs5749237	0.82[ASN][1000 genomes]
rs5749244	0.83[ASN][1000 genomes]
rs5749254	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5749260	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5753518	0.82[ASN][1000 genomes]
rs5753528	0.82[ASN][1000 genomes]
rs5753531	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5753550	0.87[ASN][1000 genomes]
rs5753551	0.87[ASN][1000 genomes]
rs5753559	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753560	0.89[ASN][1000 genomes]
rs5753573	0.80[ASN][1000 genomes]
rs5753592	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5753595	1.00[EUR][1000 genomes]
rs58315696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5997940	0.80[ASN][1000 genomes]
rs62236175	0.80[ASN][1000 genomes]
rs68136222	0.82[ASN][1000 genomes]
rs72617294	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72617295	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72617298	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs737809	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart
2	chr22:31744200-31748400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr22:31744200-31750400	Weak transcription	Spleen	Spleen
4	chr22:31745200-31751400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:31747000-31748200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr22:31747000-31750400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr22:31747800-31748600	Enhancers	HepG2	liver

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