Variant report
Variant | rs5753573 |
---|---|
Chromosome Location | chr22:31754617-31754618 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000100105 | Chromatin interaction |
ENSG00000185721 | Chromatin interaction |
ENSG00000213888 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1005624 | 0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs10428007 | 0.94[EUR][1000 genomes] |
rs12628752 | 0.83[EUR][1000 genomes] |
rs17220369 | 0.94[EUR][1000 genomes] |
rs2239905 | 0.94[EUR][1000 genomes] |
rs2239906 | 0.91[EUR][1000 genomes] |
rs2267171 | 0.94[EUR][1000 genomes] |
rs2283878 | 0.89[EUR][1000 genomes] |
rs2413041 | 0.89[EUR][1000 genomes] |
rs28514306 | 0.80[ASN][1000 genomes] |
rs34184692 | 0.87[EUR][1000 genomes] |
rs4615 | 0.94[EUR][1000 genomes] |
rs4820040 | 0.83[EUR][1000 genomes] |
rs4820965 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs55737363 | 0.87[EUR][1000 genomes] |
rs55900008 | 0.87[EUR][1000 genomes] |
rs5749226 | 0.87[EUR][1000 genomes] |
rs5749232 | 0.87[EUR][1000 genomes] |
rs5749237 | 0.89[EUR][1000 genomes] |
rs5749244 | 0.94[EUR][1000 genomes] |
rs5749260 | 0.88[ASN][1000 genomes] |
rs5753528 | 0.94[EUR][1000 genomes] |
rs5753550 | 0.90[EUR][1000 genomes] |
rs5753551 | 0.94[EUR][1000 genomes] |
rs5753560 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs5753577 | 0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs58315696 | 0.80[ASN][1000 genomes] |
rs61006749 | 0.87[EUR][1000 genomes] |
rs62236175 | 0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs62237396 | 0.87[EUR][1000 genomes] |
rs62237398 | 0.87[EUR][1000 genomes] |
rs62237399 | 0.87[EUR][1000 genomes] |
rs62237400 | 0.87[EUR][1000 genomes] |
rs62237404 | 0.83[EUR][1000 genomes] |
rs62237436 | 0.87[EUR][1000 genomes] |
rs68136222 | 0.89[EUR][1000 genomes] |
rs72617298 | 0.86[ASN][1000 genomes] |
rs73158522 | 0.87[EUR][1000 genomes] |
rs737809 | 0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv834176 | chr22:31682426-31864701 | Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 52 gene(s) | inside rSNPs | diseases |
2 | esv3333136 | chr22:31704947-31758417 | Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
3 | esv1816779 | chr22:31743711-31797094 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 13 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:31744000-31762200 | Weak transcription | Right Atrium | heart |