Variant report

Variant	rs62236175
Chromosome Location	chr22:31755616-31755617
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31741315..31744300-chr22:31752063..31756398,4	K562	blood:

Variant related genes	Relation type
ENSG00000213888	Chromatin interaction
ENSG00000100105	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1005624	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10428007	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12106582	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12627805	0.81[AMR][1000 genomes]
rs12628752	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17220369	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2239905	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2239906	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2267171	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2283878	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2413041	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28514306	0.80[ASN][1000 genomes]
rs28709894	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34184692	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4561750	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4615	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4645077	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4820040	0.85[EUR][1000 genomes]
rs4820949	0.81[AMR][1000 genomes]
rs4820965	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55737363	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55900008	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5749226	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5749232	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs5749237	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5749244	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5749260	0.88[ASN][1000 genomes]
rs5753488	0.81[AMR][1000 genomes]
rs5753499	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs5753528	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5753550	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5753551	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs5753559	0.85[ASN][1000 genomes]
rs5753560	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5753573	0.89[AFR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58315696	0.82[ASN][1000 genomes]
rs61006749	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237396	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237398	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237399	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237400	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62237404	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62237436	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68136222	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72617298	0.86[ASN][1000 genomes]
rs73158522	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs737809	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs886074	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834176	chr22:31682426-31864701	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
2	esv3333136	chr22:31704947-31758417	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1816779	chr22:31743711-31797094	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31744000-31762200	Weak transcription	Right Atrium	heart

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