Variant report

Variant	rs57537760
Chromosome Location	chr1:67247511-67247512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56677017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57776822	1.00[AMR][1000 genomes]
rs58493836	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59280098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59470667	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60335591	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61085917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61441557	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085097	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67245800-67247600	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links