Variant report

Variant	rs61441557
Chromosome Location	chr1:67227937-67227938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56677017	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56818650	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57537760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57776822	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58493836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59280098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59470667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60335591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61085917	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74085102	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1009176	chr1:67227876-67231940	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67221600-67236400	Weak transcription	Liver	Liver
2	chr1:67222800-67236200	Weak transcription	Psoas Muscle	Psoas
3	chr1:67224400-67228400	Weak transcription	Fetal Heart	heart
4	chr1:67226200-67228400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:67226200-67231400	Weak transcription	K562	blood
6	chr1:67227200-67228000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:67227200-67228000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:67227400-67236400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:67227800-67229800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
10	chr1:67227800-67230000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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