Variant report

Variant	rs57541374
Chromosome Location	chr6:133905769-133905770
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12181423	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2327360	0.81[AMR][1000 genomes]
rs6921501	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6922078	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs6933964	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493651	0.81[AMR][1000 genomes]
rs9493656	0.94[AFR][1000 genomes]
rs9493657	0.94[AFR][1000 genomes]
rs9493659	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133904800-133909800	Enhancers	Fetal Lung	lung
4	chr6:133905400-133908200	Weak transcription	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links