Variant report

Variant	rs9493657
Chromosome Location	chr6:133907472-133907473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs12181423	0.86[AFR][1000 genomes]
rs1316434	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17643865	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17716589	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820694	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17820839	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256717	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2257180	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2327359	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327362	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636592	0.93[EUR][1000 genomes]
rs2636593	0.93[EUR][1000 genomes]
rs2636594	0.93[EUR][1000 genomes]
rs2636595	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636596	0.95[ASN][1000 genomes]
rs2636597	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636598	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636599	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636600	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636601	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636602	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636603	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636607	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636608	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636609	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636610	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636613	0.92[EUR][1000 genomes]
rs2636618	0.92[EUR][1000 genomes]
rs2636620	0.86[EUR][1000 genomes]
rs2636621	0.87[EUR][1000 genomes]
rs2636622	0.92[EUR][1000 genomes]
rs2636624	0.92[EUR][1000 genomes]
rs2636625	0.87[EUR][1000 genomes]
rs2677813	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677814	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677815	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677816	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677817	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677818	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677819	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677820	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677821	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677822	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677823	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2677824	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677826	0.93[EUR][1000 genomes]
rs2677828	0.93[EUR][1000 genomes]
rs2677830	0.93[EUR][1000 genomes]
rs2677831	0.92[EUR][1000 genomes]
rs2677833	0.92[EUR][1000 genomes]
rs2677834	0.92[EUR][1000 genomes]
rs2999164	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4470863	0.83[EUR][1000 genomes]
rs55804939	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56224918	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56324807	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57541374	0.94[AFR][1000 genomes]
rs58156801	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58974623	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6902621	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6903968	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6921501	0.88[AFR][1000 genomes]
rs6922078	0.91[AFR][1000 genomes]
rs6925935	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933964	0.91[AFR][1000 genomes]
rs72999404	0.93[EUR][1000 genomes]
rs73005574	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73005598	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73007410	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73007468	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73007473	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73007475	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007476	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9285475	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9321407	0.83[EUR][1000 genomes]
rs9373058	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373059	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373060	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373061	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375971	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375972	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9375973	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9385653	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385654	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9389087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402518	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402521	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402523	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402524	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402525	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493650	0.96[ASN][1000 genomes]
rs9493656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493659	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133904800-133909800	Enhancers	Fetal Lung	lung
4	chr6:133905400-133908200	Weak transcription	NHLF	lung
5	chr6:133906000-133908800	Weak transcription	HSMM	muscle
6	chr6:133906000-133912000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:133906600-133908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:133907200-133911400	Weak transcription	Fetal Kidney	kidney
9	chr6:133907400-133908000	Weak transcription	A549	lung

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