Variant report

Variant	rs55804939
Chromosome Location	chr6:133904924-133904925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1316434	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17643865	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17716589	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17820694	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17820839	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2256717	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2257180	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2327359	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2327362	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2636595	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636596	0.81[ASN][1000 genomes]
rs2636597	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636598	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636599	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636600	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636601	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636602	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636603	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2636607	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2636608	0.82[ASN][1000 genomes]
rs2636609	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2636610	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2636613	0.86[AFR][1000 genomes]
rs2636618	0.86[AFR][1000 genomes]
rs2636622	0.86[AFR][1000 genomes]
rs2677813	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677814	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677815	0.82[ASN][1000 genomes]
rs2677816	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677817	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2677818	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677819	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677820	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677821	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677822	0.83[ASN][1000 genomes]
rs2677823	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2677824	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2677826	0.86[AFR][1000 genomes]
rs2677830	0.86[AFR][1000 genomes]
rs2677831	0.86[AFR][1000 genomes]
rs2999164	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56224918	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56324807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58156801	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58974623	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6902621	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6903968	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6925935	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72999404	0.86[AFR][1000 genomes]
rs73005574	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs73005598	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73007410	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73007468	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73007473	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73007475	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73007476	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9285475	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9321407	0.86[AFR][1000 genomes]
rs9373058	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373059	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373060	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9373061	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9373062	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375971	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9375972	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375973	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9385653	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9385654	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9389087	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9402518	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402521	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9402523	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9402524	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9402525	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493650	0.81[ASN][1000 genomes]
rs9493656	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9493657	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv818457	chr6:133899539-133905744	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:133904800-133909800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links