Variant report

Variant	rs72999404
Chromosome Location	chr6:133931492-133931493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133929403..133932343-chr6:133932388..133934855,2	K562	blood:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs1316434	0.95[EUR][1000 genomes]
rs17643865	0.91[EUR][1000 genomes]
rs17716589	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17820694	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs17820839	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2256717	0.95[EUR][1000 genomes]
rs2257180	0.95[EUR][1000 genomes]
rs2327359	0.92[EUR][1000 genomes]
rs2327362	0.95[EUR][1000 genomes]
rs2636592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636593	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636595	0.95[EUR][1000 genomes]
rs2636597	0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2636598	0.95[EUR][1000 genomes]
rs2636599	0.95[EUR][1000 genomes]
rs2636600	0.95[EUR][1000 genomes]
rs2636601	0.95[EUR][1000 genomes]
rs2636602	0.95[EUR][1000 genomes]
rs2636603	0.95[EUR][1000 genomes]
rs2636607	0.95[EUR][1000 genomes]
rs2636608	0.93[EUR][1000 genomes]
rs2636609	0.95[EUR][1000 genomes]
rs2636610	0.95[EUR][1000 genomes]
rs2636613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636618	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636620	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2636621	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2636622	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2636624	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2636625	0.94[EUR][1000 genomes]
rs2636627	0.83[EUR][1000 genomes]
rs2677813	0.95[EUR][1000 genomes]
rs2677814	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2677815	0.93[EUR][1000 genomes]
rs2677816	0.93[EUR][1000 genomes]
rs2677817	0.95[EUR][1000 genomes]
rs2677818	0.95[EUR][1000 genomes]
rs2677819	0.95[EUR][1000 genomes]
rs2677820	0.95[EUR][1000 genomes]
rs2677821	0.95[EUR][1000 genomes]
rs2677822	0.93[EUR][1000 genomes]
rs2677823	0.95[EUR][1000 genomes]
rs2677824	0.95[EUR][1000 genomes]
rs2677826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677828	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2677830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677831	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677833	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2677834	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2999164	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4470863	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4895385	0.83[EUR][1000 genomes]
rs55804939	0.86[AFR][1000 genomes]
rs56224918	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56324807	0.86[AFR][1000 genomes]
rs58156801	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs58974623	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6569888	0.83[EUR][1000 genomes]
rs6902621	0.91[EUR][1000 genomes]
rs6903968	0.91[EUR][1000 genomes]
rs6925935	0.90[EUR][1000 genomes]
rs73005574	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73005598	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73007410	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73007468	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73007473	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73007475	0.91[EUR][1000 genomes]
rs73007476	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9285475	0.95[EUR][1000 genomes]
rs9321407	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9373058	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9373059	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9373060	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9373061	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9373062	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9375971	0.91[EUR][1000 genomes]
rs9375972	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9375973	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9385653	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9385654	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9389087	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9389089	0.83[EUR][1000 genomes]
rs9402518	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9402521	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9402523	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9402524	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9402525	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9493656	0.93[EUR][1000 genomes]
rs9493657	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133927000-133932000	Weak transcription	Adipose Nuclei	Adipose
2	chr6:133929000-133931600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:133929000-133935600	Enhancers	Hela-S3	cervix
4	chr6:133930000-133933000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:133930200-133932400	Enhancers	HSMM	muscle
6	chr6:133930400-133931600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133930400-133931600	Enhancers	Fetal Lung	lung
8	chr6:133930400-133932400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:133930400-133932600	Enhancers	NHLF	lung
10	chr6:133930600-133931600	Enhancers	NHEK	skin
11	chr6:133930600-133931800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:133930600-133932000	Enhancers	HMEC	breast
13	chr6:133930600-133933000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:133930600-133933000	Enhancers	NHDF-Ad	bronchial
15	chr6:133930800-133931600	Enhancers	HUVEC	blood vessel
16	chr6:133930800-133931800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:133930800-133932200	Enhancers	HSMMtube	muscle
18	chr6:133930800-133932800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:133931200-133932400	Flanking Active TSS	A549	lung
20	chr6:133931200-133934000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:133931200-133934200	Weak transcription	Fetal Kidney	kidney
22	chr6:133931400-133931600	Enhancers	NH-A	brain
23	chr6:133931400-133931800	Flanking Active TSS	Osteobl	bone
24	chr6:133931400-133932200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:133931400-133934800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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