Variant report

Variant	rs4470863
Chromosome Location	chr6:133960911-133960912
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1316434	0.84[EUR][1000 genomes]
rs17643865	0.81[EUR][1000 genomes]
rs17716589	0.83[EUR][1000 genomes]
rs17820694	0.82[EUR][1000 genomes]
rs17820839	0.82[EUR][1000 genomes]
rs2256717	0.84[EUR][1000 genomes]
rs2257180	0.84[EUR][1000 genomes]
rs2327359	0.82[EUR][1000 genomes]
rs2327362	0.84[EUR][1000 genomes]
rs2636592	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636593	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636594	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636595	0.84[EUR][1000 genomes]
rs2636597	0.84[EUR][1000 genomes]
rs2636598	0.84[EUR][1000 genomes]
rs2636599	0.84[EUR][1000 genomes]
rs2636600	0.84[EUR][1000 genomes]
rs2636601	0.84[EUR][1000 genomes]
rs2636602	0.84[EUR][1000 genomes]
rs2636603	0.84[EUR][1000 genomes]
rs2636607	0.84[EUR][1000 genomes]
rs2636608	0.83[EUR][1000 genomes]
rs2636609	0.84[EUR][1000 genomes]
rs2636610	0.84[EUR][1000 genomes]
rs2636613	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636618	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636620	0.83[EUR][1000 genomes]
rs2636621	0.84[EUR][1000 genomes]
rs2636622	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636624	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636625	0.84[EUR][1000 genomes]
rs2636627	0.95[EUR][1000 genomes]
rs2677813	0.84[EUR][1000 genomes]
rs2677814	0.84[EUR][1000 genomes]
rs2677815	0.83[EUR][1000 genomes]
rs2677816	0.86[EUR][1000 genomes]
rs2677817	0.84[EUR][1000 genomes]
rs2677818	0.84[EUR][1000 genomes]
rs2677819	0.84[EUR][1000 genomes]
rs2677820	0.84[EUR][1000 genomes]
rs2677821	0.84[EUR][1000 genomes]
rs2677822	0.86[EUR][1000 genomes]
rs2677823	0.84[EUR][1000 genomes]
rs2677824	0.84[EUR][1000 genomes]
rs2677826	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677828	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2677830	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677831	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677833	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2677834	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2999164	0.82[EUR][1000 genomes]
rs4895385	0.95[EUR][1000 genomes]
rs56224918	0.82[EUR][1000 genomes]
rs58156801	0.82[EUR][1000 genomes]
rs58974623	0.82[EUR][1000 genomes]
rs6569888	0.95[EUR][1000 genomes]
rs6902621	0.81[EUR][1000 genomes]
rs6903968	0.81[EUR][1000 genomes]
rs6925935	0.83[EUR][1000 genomes]
rs72999404	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73005574	0.83[EUR][1000 genomes]
rs73005598	0.81[EUR][1000 genomes]
rs73007410	0.81[EUR][1000 genomes]
rs73007468	0.81[EUR][1000 genomes]
rs73007473	0.81[EUR][1000 genomes]
rs73007475	0.81[EUR][1000 genomes]
rs73007476	0.81[EUR][1000 genomes]
rs9285475	0.84[EUR][1000 genomes]
rs9321407	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373058	0.81[EUR][1000 genomes]
rs9373059	0.81[EUR][1000 genomes]
rs9373060	0.81[EUR][1000 genomes]
rs9373061	0.81[EUR][1000 genomes]
rs9373062	0.83[EUR][1000 genomes]
rs9375971	0.81[EUR][1000 genomes]
rs9375972	0.82[EUR][1000 genomes]
rs9375973	0.82[EUR][1000 genomes]
rs9385653	0.81[EUR][1000 genomes]
rs9385654	0.81[EUR][1000 genomes]
rs9389087	0.83[EUR][1000 genomes]
rs9389089	0.95[EUR][1000 genomes]
rs9402518	0.81[EUR][1000 genomes]
rs9402521	0.81[EUR][1000 genomes]
rs9402523	0.82[EUR][1000 genomes]
rs9402524	0.82[EUR][1000 genomes]
rs9402525	0.82[EUR][1000 genomes]
rs9493656	0.83[EUR][1000 genomes]
rs9493657	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
2	chr6:133953800-133962600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:133953800-133965800	Weak transcription	Osteobl	bone
4	chr6:133954400-133965800	Weak transcription	A549	lung
5	chr6:133957000-133966400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:133959400-133962200	Weak transcription	Fetal Lung	lung
7	chr6:133959400-133965800	Weak transcription	NHLF	lung
8	chr6:133959400-133966000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133959600-133962400	Weak transcription	Fetal Stomach	stomach

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