Variant report

Variant	rs1316434
Chromosome Location	chr6:133916028-133916029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs17643865	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17716589	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17820694	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17820839	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2256717	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2257180	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327359	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636592	0.95[EUR][1000 genomes]
rs2636593	0.95[EUR][1000 genomes]
rs2636594	0.95[EUR][1000 genomes]
rs2636595	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636596	0.96[ASN][1000 genomes]
rs2636597	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636598	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636600	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636601	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636602	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636603	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636607	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636608	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636609	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636610	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636613	0.94[EUR][1000 genomes]
rs2636618	0.94[EUR][1000 genomes]
rs2636620	0.87[EUR][1000 genomes]
rs2636621	0.89[EUR][1000 genomes]
rs2636622	0.94[EUR][1000 genomes]
rs2636624	0.94[EUR][1000 genomes]
rs2636625	0.89[EUR][1000 genomes]
rs2677813	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677814	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677815	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677816	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677817	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2677818	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677819	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677820	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677822	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2677824	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2677826	0.95[EUR][1000 genomes]
rs2677828	0.95[EUR][1000 genomes]
rs2677830	0.95[EUR][1000 genomes]
rs2677831	0.94[EUR][1000 genomes]
rs2677833	0.94[EUR][1000 genomes]
rs2677834	0.94[EUR][1000 genomes]
rs2999164	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4470863	0.84[EUR][1000 genomes]
rs55804939	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56224918	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56324807	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58156801	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58974623	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6902621	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6903968	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6925935	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72999404	0.95[EUR][1000 genomes]
rs73005574	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73005598	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007410	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007468	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007473	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73007475	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73007476	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9285475	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9321407	0.84[EUR][1000 genomes]
rs9373058	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373059	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373060	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9373061	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9373062	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375971	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9375972	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9375973	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385653	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9385654	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9389087	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402518	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402521	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402523	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402524	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9402525	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493650	0.95[ASN][1000 genomes]
rs9493656	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9493657	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133912400-133925200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133912600-133916800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:133913000-133916800	Weak transcription	NHLF	lung
4	chr6:133913400-133917400	Enhancers	Fetal Lung	lung
5	chr6:133913600-133916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:133913800-133917000	Enhancers	Fetal Stomach	stomach
7	chr6:133915200-133917400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:133915200-133917400	Enhancers	A549	lung
9	chr6:133915400-133917000	Enhancers	Osteobl	bone
10	chr6:133915600-133917000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:133915800-133916200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:133915800-133916400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:133915800-133916400	Enhancers	NHDF-Ad	bronchial
14	chr6:133915800-133917000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:133915800-133917200	Enhancers	Hela-S3	cervix
16	chr6:133916000-133916200	Active TSS	Ovary	ovary
17	chr6:133916000-133925200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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