Variant report

Variant	rs9493650
Chromosome Location	chr6:133903452-133903453
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1316434	0.95[ASN][1000 genomes]
rs17643865	0.98[ASN][1000 genomes]
rs17716589	0.96[ASN][1000 genomes]
rs17820694	0.96[ASN][1000 genomes]
rs17820839	0.96[ASN][1000 genomes]
rs2256717	0.94[ASN][1000 genomes]
rs2257180	0.94[ASN][1000 genomes]
rs2327359	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2327360	0.89[AFR][1000 genomes]
rs2327362	0.91[ASN][1000 genomes]
rs2636595	0.94[ASN][1000 genomes]
rs2636596	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636597	0.94[ASN][1000 genomes]
rs2636598	0.94[ASN][1000 genomes]
rs2636599	0.94[ASN][1000 genomes]
rs2636600	0.94[ASN][1000 genomes]
rs2636601	0.94[ASN][1000 genomes]
rs2636602	0.94[ASN][1000 genomes]
rs2636603	0.94[ASN][1000 genomes]
rs2636607	0.95[ASN][1000 genomes]
rs2636608	0.95[ASN][1000 genomes]
rs2636609	0.95[ASN][1000 genomes]
rs2636610	0.95[ASN][1000 genomes]
rs2677813	0.95[ASN][1000 genomes]
rs2677814	0.95[ASN][1000 genomes]
rs2677815	0.95[ASN][1000 genomes]
rs2677816	0.95[ASN][1000 genomes]
rs2677817	0.95[ASN][1000 genomes]
rs2677818	0.94[ASN][1000 genomes]
rs2677819	0.94[ASN][1000 genomes]
rs2677820	0.94[ASN][1000 genomes]
rs2677821	0.94[ASN][1000 genomes]
rs2677822	0.94[ASN][1000 genomes]
rs2677823	0.94[ASN][1000 genomes]
rs2677824	0.91[ASN][1000 genomes]
rs2999164	0.96[ASN][1000 genomes]
rs55804939	0.81[ASN][1000 genomes]
rs56224918	0.96[ASN][1000 genomes]
rs56324807	0.81[ASN][1000 genomes]
rs58156801	0.96[ASN][1000 genomes]
rs58974623	0.95[ASN][1000 genomes]
rs6902621	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6903968	0.97[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6925935	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs73005574	0.95[ASN][1000 genomes]
rs73005598	0.98[ASN][1000 genomes]
rs73007410	0.98[ASN][1000 genomes]
rs73007468	0.98[ASN][1000 genomes]
rs73007473	0.98[ASN][1000 genomes]
rs73007475	0.96[ASN][1000 genomes]
rs73007476	0.96[ASN][1000 genomes]
rs9285475	0.94[ASN][1000 genomes]
rs9373058	0.98[ASN][1000 genomes]
rs9373059	0.98[ASN][1000 genomes]
rs9373060	0.96[ASN][1000 genomes]
rs9373061	0.98[ASN][1000 genomes]
rs9373062	0.96[ASN][1000 genomes]
rs9375971	0.98[ASN][1000 genomes]
rs9375972	0.96[ASN][1000 genomes]
rs9375973	0.96[ASN][1000 genomes]
rs9385653	0.98[ASN][1000 genomes]
rs9385654	0.98[ASN][1000 genomes]
rs9389087	0.96[ASN][1000 genomes]
rs9402518	0.98[ASN][1000 genomes]
rs9402521	0.98[ASN][1000 genomes]
rs9402523	0.96[ASN][1000 genomes]
rs9402524	0.96[ASN][1000 genomes]
rs9402525	0.96[ASN][1000 genomes]
rs9493651	0.90[AFR][1000 genomes]
rs9493656	0.96[ASN][1000 genomes]
rs9493657	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886682	chr6:133892208-133943732	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv818457	chr6:133899539-133905744	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133895600-133908000	Weak transcription	NHDF-Ad	bronchial
2	chr6:133898600-133911400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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