Variant report

Variant	rs2636620
Chromosome Location	chr6:133945826-133945827
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1316434	0.87[EUR][1000 genomes]
rs17643865	0.84[EUR][1000 genomes]
rs17716589	0.86[EUR][1000 genomes]
rs17820694	0.85[EUR][1000 genomes]
rs17820839	0.85[EUR][1000 genomes]
rs2256717	0.87[EUR][1000 genomes]
rs2257180	0.87[EUR][1000 genomes]
rs2327359	0.85[EUR][1000 genomes]
rs2327362	0.87[EUR][1000 genomes]
rs2636592	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2636593	0.92[EUR][1000 genomes]
rs2636594	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2636595	0.87[EUR][1000 genomes]
rs2636597	0.87[EUR][1000 genomes]
rs2636598	0.87[EUR][1000 genomes]
rs2636599	0.87[EUR][1000 genomes]
rs2636600	0.87[EUR][1000 genomes]
rs2636601	0.87[EUR][1000 genomes]
rs2636602	0.87[EUR][1000 genomes]
rs2636603	0.87[EUR][1000 genomes]
rs2636607	0.87[EUR][1000 genomes]
rs2636608	0.86[EUR][1000 genomes]
rs2636609	0.87[EUR][1000 genomes]
rs2636610	0.87[EUR][1000 genomes]
rs2636613	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2636618	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636622	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636624	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636625	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636627	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2677813	0.87[EUR][1000 genomes]
rs2677814	0.87[EUR][1000 genomes]
rs2677815	0.86[EUR][1000 genomes]
rs2677816	0.86[EUR][1000 genomes]
rs2677817	0.87[EUR][1000 genomes]
rs2677818	0.87[EUR][1000 genomes]
rs2677819	0.87[EUR][1000 genomes]
rs2677820	0.87[EUR][1000 genomes]
rs2677821	0.87[EUR][1000 genomes]
rs2677822	0.86[EUR][1000 genomes]
rs2677823	0.87[EUR][1000 genomes]
rs2677824	0.87[EUR][1000 genomes]
rs2677826	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2677828	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2677830	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2677831	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2677833	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2677834	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2999164	0.85[EUR][1000 genomes]
rs4470863	0.83[EUR][1000 genomes]
rs4895385	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56224918	0.85[EUR][1000 genomes]
rs58156801	0.85[EUR][1000 genomes]
rs58974623	0.85[EUR][1000 genomes]
rs6569888	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6902621	0.84[EUR][1000 genomes]
rs6903968	0.84[EUR][1000 genomes]
rs6925935	0.83[EUR][1000 genomes]
rs72999404	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73005598	0.84[EUR][1000 genomes]
rs73007410	0.84[EUR][1000 genomes]
rs73007468	0.84[EUR][1000 genomes]
rs73007473	0.84[EUR][1000 genomes]
rs73007475	0.84[EUR][1000 genomes]
rs73007476	0.84[EUR][1000 genomes]
rs9285475	0.87[EUR][1000 genomes]
rs9321407	0.83[EUR][1000 genomes]
rs9373058	0.84[EUR][1000 genomes]
rs9373059	0.84[EUR][1000 genomes]
rs9373060	0.84[EUR][1000 genomes]
rs9373061	0.84[EUR][1000 genomes]
rs9373062	0.86[EUR][1000 genomes]
rs9375971	0.84[EUR][1000 genomes]
rs9375972	0.85[EUR][1000 genomes]
rs9375973	0.85[EUR][1000 genomes]
rs9385653	0.84[EUR][1000 genomes]
rs9385654	0.84[EUR][1000 genomes]
rs9389087	0.86[EUR][1000 genomes]
rs9389089	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9402518	0.84[EUR][1000 genomes]
rs9402521	0.84[EUR][1000 genomes]
rs9402523	0.85[EUR][1000 genomes]
rs9402524	0.85[EUR][1000 genomes]
rs9402525	0.85[EUR][1000 genomes]
rs9493656	0.86[EUR][1000 genomes]
rs9493657	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019267	chr6:133912335-133975187	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133942800-133948400	Enhancers	Fetal Lung	lung
2	chr6:133944400-133951800	Weak transcription	NH-A	brain
3	chr6:133944400-133962000	Weak transcription	Fetal Kidney	kidney
4	chr6:133944600-133952400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:133944800-133946200	Weak transcription	Aorta	Aorta
6	chr6:133945200-133952000	Weak transcription	A549	lung
7	chr6:133945200-133952400	Weak transcription	NHDF-Ad	bronchial
8	chr6:133945400-133948200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:133945400-133952400	Weak transcription	Ovary	ovary
10	chr6:133945800-133946200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:133945800-133948200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:133945800-133952000	Weak transcription	Osteobl	bone
13	chr6:133945800-133952400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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