The 2.0 version of rSNPBase

Variant report

Variant rs5754269
Chromosome Location chr22:33173049-33173050
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:19 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:33151000-33175400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr22:33168200-33175800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr22:33169200-33175400 Weak transcription HUES48 Cell Line embryonic stem cell
4 chr22:33171600-33173400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr22:33171600-33174800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr22:33171800-33174200 Enhancers Fetal Thymus thymus
7 chr22:33171800-33175000 Enhancers HepG2 liver
8 chr22:33172000-33173400 Enhancers Primary hematopoietic stem cells blood
9 chr22:33172000-33173600 Enhancers Breast Myoepithelial Primary Cells Breast
10 chr22:33172200-33173200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
11 chr22:33172400-33173400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
12 chr22:33172600-33173200 Enhancers HSMM muscle
13 chr22:33172600-33173400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr22:33172600-33175400 Weak transcription Liver Liver
15 chr22:33172800-33173200 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
16 chr22:33173000-33174000 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr22:33173000-33174000 Weak transcription Adipose Nuclei Adipose
18 chr22:33173000-33174000 Weak transcription Spleen Spleen
19 chr22:33173000-33175600 Weak transcription Pancreas Pancrea

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Last update: Aug 31, 2015