Variant report

Variant	rs3788505
Chromosome Location	chr22:33160514-33160515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32920308-32927723..22:33154607-33167707	H1-hESC	embryonic stem cell:	embryo
2	22:32578360-32590642..22:33154607-33167707	K562	blood:
3	22:32342898-32343477..22:33154607-33167707	Hela-S3	cervix:
4	chr22:33159150..33161467-chr22:33197718..33199220,2	MCF-7	breast:
5	22:32764253-32784733..22:33154607-33167707	K562	blood:
6	22:32053085-32061138..22:33154607-33167707	K562	blood:
7	22:33154607-33167707..22:33262063-33266567	Hela-S3	cervix:
8	22:33154607-33167707..22:33339333-33353583	Hela-S3	cervix:
9	22:32292186-32294405..22:33154607-33167707	K562	blood:
10	22:32594665-32606395..22:33154607-33167707	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000254127	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000242082	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000232218	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1079734	0.90[ASN][1000 genomes]
rs17503	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2001048	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2001049	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2001050	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2001051	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2413152	0.89[ASN][1000 genomes]
rs28496892	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4820094	0.92[ASN][1000 genomes]
rs4821099	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4821103	0.89[ASN][1000 genomes]
rs4992163	0.89[ASN][1000 genomes]
rs5749507	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5749508	0.88[EUR][1000 genomes]
rs5754252	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5754255	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5754259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754264	0.89[ASN][1000 genomes]
rs5754265	0.89[ASN][1000 genomes]
rs5754267	0.87[ASN][1000 genomes]
rs5754268	0.89[ASN][1000 genomes]
rs5754269	0.87[ASN][1000 genomes]
rs5754270	0.89[ASN][1000 genomes]
rs5754271	0.89[ASN][1000 genomes]
rs5754275	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754276	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754277	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5754279	0.86[ASN][1000 genomes]
rs5994624	0.89[ASN][1000 genomes]
rs5994626	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994627	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5998617	0.91[ASN][1000 genomes]
rs5998630	0.89[ASN][1000 genomes]
rs5998631	0.89[ASN][1000 genomes]
rs5998632	0.89[ASN][1000 genomes]
rs5998633	0.89[ASN][1000 genomes]
rs5998635	0.89[ASN][1000 genomes]
rs7289631	0.89[ASN][1000 genomes]
rs8135713	0.89[ASN][1000 genomes]
rs978808	0.89[ASN][1000 genomes]
rs978809	0.89[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33151000-33175400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr22:33155000-33161400	Enhancers	Right Atrium	heart
3	chr22:33156200-33160600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr22:33156200-33161400	Enhancers	Adipose Nuclei	Adipose
5	chr22:33156400-33161600	Enhancers	Spleen	Spleen
6	chr22:33158200-33160600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:33158400-33171800	Weak transcription	HepG2	liver
8	chr22:33159200-33161800	Enhancers	Placenta	Placenta
9	chr22:33159400-33161000	Enhancers	Right Ventricle	heart
10	chr22:33159600-33160800	Enhancers	Brain Hippocampus Middle	brain
11	chr22:33159600-33161800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr22:33159600-33161800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr22:33159600-33161800	Enhancers	Left Ventricle	heart
14	chr22:33159600-33162000	Enhancers	Fetal Thymus	thymus
15	chr22:33159800-33161800	Enhancers	Lung	lung
16	chr22:33159800-33162200	Enhancers	Fetal Stomach	stomach
17	chr22:33160000-33161800	Enhancers	Fetal Muscle Trunk	muscle
18	chr22:33160000-33162200	Enhancers	Fetal Muscle Leg	muscle
19	chr22:33160200-33160600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr22:33160200-33160800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr22:33160200-33160800	Enhancers	Ovary	ovary
22	chr22:33160200-33160800	Enhancers	Thymus	Thymus
23	chr22:33160200-33161200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr22:33160200-33161200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr22:33160200-33161400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr22:33160200-33161400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr22:33160200-33161400	Enhancers	Hela-S3	cervix
28	chr22:33160200-33161400	Enhancers	Osteobl	bone
29	chr22:33160200-33161600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:33160200-33161600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr22:33160200-33161600	Enhancers	Primary hematopoietic stem cells	blood
32	chr22:33160200-33161800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr22:33160200-33161800	Enhancers	Fetal Kidney	kidney
34	chr22:33160200-33161800	Enhancers	Fetal Lung	lung
35	chr22:33160200-33162000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr22:33160200-33162000	Enhancers	Fetal Heart	heart
37	chr22:33160400-33160600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr22:33160400-33160600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
39	chr22:33160400-33160600	Enhancers	Esophagus	oesophagus
40	chr22:33160400-33160600	Enhancers	Psoas Muscle	Psoas
41	chr22:33160400-33160600	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr22:33160400-33160600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
43	chr22:33160400-33160800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr22:33160400-33160800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr22:33160400-33160800	Enhancers	Primary T cells from cord blood	blood
46	chr22:33160400-33160800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr22:33160400-33160800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr22:33160400-33160800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr22:33160400-33160800	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr22:33160400-33160800	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links