The 2.0 version of rSNPBase

Variant report

Variant rs5998617
Chromosome Location chr22:33150769-33150770
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:33148000-33151200 Enhancers HSMM muscle
2 chr22:33148000-33151200 Enhancers NH-A brain
3 chr22:33148000-33151200 Enhancers Osteobl bone
4 chr22:33148000-33151400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr22:33148400-33151000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr22:33148400-33151200 Enhancers Fetal Muscle Trunk muscle
7 chr22:33148600-33151200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr22:33148600-33151400 Enhancers Fetal Muscle Leg muscle
9 chr22:33148600-33151600 Enhancers Adipose Nuclei Adipose
10 chr22:33148800-33151200 Enhancers HSMMtube muscle
11 chr22:33149000-33151600 Enhancers Fetal Intestine Small intestine
12 chr22:33149200-33151800 Enhancers Fetal Intestine Large intestine
13 chr22:33149200-33153400 Weak transcription Fetal Thymus thymus
14 chr22:33149200-33157200 Weak transcription NHLF lung
15 chr22:33149400-33152600 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr22:33149400-33156600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr22:33149400-33157400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr22:33149600-33156400 Weak transcription Placenta Placenta
19 chr22:33149600-33157000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr22:33149800-33150800 Enhancers Duodenum Smooth Muscle Duodenum
21 chr22:33150000-33151000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr22:33150000-33151400 Enhancers Skeletal Muscle Male skeletal muscle
23 chr22:33150200-33151200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr22:33150200-33151200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
25 chr22:33150200-33151400 Enhancers NHDF-Ad bronchial
26 chr22:33150200-33151600 Enhancers Fetal Adrenal Gland Adrenal Gland
27 chr22:33150400-33150800 Enhancers Breast Myoepithelial Primary Cells Breast
28 chr22:33150400-33150800 Flanking Active TSS HepG2 liver
29 chr22:33150400-33151000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr22:33150400-33151000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr22:33150400-33151000 Enhancers Fetal Stomach stomach
32 chr22:33150400-33151000 Enhancers Right Ventricle heart
33 chr22:33150400-33151200 Enhancers Liver Liver
34 chr22:33150400-33151200 Enhancers Lung lung
35 chr22:33150400-33151200 Enhancers Small Intestine intestine
36 chr22:33150400-33151800 Enhancers Left Ventricle heart
37 chr22:33150600-33150800 Flanking Active TSS Duodenum Mucosa Duodenum
38 chr22:33150600-33150800 Enhancers Placenta Amnion Placenta Amnion
39 chr22:33150600-33150800 Enhancers NHEK skin
40 chr22:33150600-33151000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr22:33150600-33151000 Flanking Active TSS Hela-S3 cervix
42 chr22:33150600-33151200 Enhancers Muscle Satellite Cultured Cells --
43 chr22:33150600-33151200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr22:33150600-33151200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr22:33150600-33151200 Enhancers Pancreas Pancrea
46 chr22:33150600-33151200 Enhancers Sigmoid Colon Sigmoid Colon
47 chr22:33150600-33151200 Enhancers HMEC breast
48 chr22:33150600-33151400 Enhancers Spleen Spleen
49 chr22:33150600-33151800 Enhancers Right Atrium heart

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Last update: Aug 31, 2015