Variant report

Variant	rs13057881
Chromosome Location	chr22:33181818-33181819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32920308-32927723..22:33178968-33185617	Hela-S3	cervix:
2	22:32170492-32188129..22:33178968-33185617	Hela-S3	cervix:
3	chr22:33181027..33183571-chr22:33197365..33199276,2	MCF-7	breast:
4	22:32868055-32872511..22:33178968-33185617	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000100234	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs130272	0.80[AFR][1000 genomes]
rs130561	0.85[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs135025	0.85[CHB][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes]
rs17503	0.85[CHB][hapmap]
rs2016293	0.82[AFR][1000 genomes]
rs242072	0.85[CHB][hapmap]
rs242082	0.91[CHB][hapmap];0.81[JPT][hapmap];0.82[YRI][hapmap]
rs242085	0.85[CHB][hapmap];0.88[YRI][hapmap]
rs242088	0.81[CHB][hapmap]
rs242089	0.81[CHB][hapmap]
rs4820094	0.95[CEU][hapmap];0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs4821099	0.85[CHB][hapmap]
rs5754259	0.85[CHB][hapmap]
rs5754276	0.81[CHB][hapmap]
rs5994626	0.81[CHB][hapmap]
rs5994627	0.85[CHB][hapmap]
rs5998617	0.81[ASN][1000 genomes]
rs5998638	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs713996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs737089	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs738992	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs80268	0.82[YRI][hapmap]
rs9606994	0.91[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9609632	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609633	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9619311	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33174200-33184600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:33176600-33184800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33176800-33182800	Enhancers	HepG2	liver
4	chr22:33176800-33185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea
8	chr22:33177600-33184600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr22:33179800-33186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr22:33180600-33184800	Weak transcription	Lung	lung
11	chr22:33180800-33182000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr22:33180800-33182200	Enhancers	Placenta	Placenta
13	chr22:33180800-33182400	Enhancers	Fetal Stomach	stomach
14	chr22:33181400-33182400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr22:33181400-33182400	Enhancers	Adipose Nuclei	Adipose
16	chr22:33181400-33182600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr22:33181600-33182200	Enhancers	Fetal Lung	lung
18	chr22:33181600-33182200	Enhancers	Placenta Amnion	Placenta Amnion
19	chr22:33181600-33182200	Enhancers	Stomach Smooth Muscle	stomach
20	chr22:33181600-33182200	Enhancers	HSMMtube	muscle
21	chr22:33181600-33182400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr22:33181800-33182000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr22:33181800-33182200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr22:33181800-33184800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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