Variant report

Variant	rs80268
Chromosome Location	chr22:33186180-33186181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13057881	0.82[YRI][hapmap]
rs135152	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242072	0.86[YRI][hapmap]
rs242078	0.90[YRI][hapmap]
rs242082	0.97[YRI][hapmap]
rs5754290	0.88[CHB][hapmap];0.82[YRI][hapmap]
rs9619311	0.96[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea
4	chr22:33179800-33186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr22:33182000-33192800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr22:33182600-33195400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr22:33183200-33187600	Enhancers	HepG2	liver
8	chr22:33184600-33186200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr22:33184600-33186200	Enhancers	Osteobl	bone
10	chr22:33185000-33186200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr22:33185200-33190200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr22:33185200-33190600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr22:33185200-33192600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr22:33185200-33192600	Weak transcription	Right Atrium	heart
15	chr22:33185200-33192800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr22:33185200-33197200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr22:33185400-33186200	Enhancers	Stomach Smooth Muscle	stomach
18	chr22:33185400-33191400	Weak transcription	Right Ventricle	heart
19	chr22:33185600-33186200	Enhancers	Colon Smooth Muscle	Colon
20	chr22:33185600-33189200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr22:33185600-33189800	Weak transcription	Fetal Muscle Leg	muscle
22	chr22:33185600-33189800	Weak transcription	Fetal Stomach	stomach
23	chr22:33185800-33190600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr22:33185800-33192400	Weak transcription	NHDF-Ad	bronchial
25	chr22:33186000-33190000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr22:33186000-33190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr22:33186000-33190600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr22:33186000-33190800	Weak transcription	Placenta	Placenta
29	chr22:33186000-33191400	Weak transcription	Adipose Nuclei	Adipose
30	chr22:33186000-33192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr22:33186000-33192400	Weak transcription	HSMMtube	muscle
32	chr22:33186000-33192600	Weak transcription	HSMM	muscle

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