Variant report
| Variant | rs575429134 |
|---|---|
| Chromosome Location | chr9:104557580-104557581 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:14)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:14 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr9:104557447-104557777 | A549 | lung: | n/a | chr9:104557616-104557627 |
| 2 | FOS | chr9:104557353-104557761 | MCF10A-Er-Src | breast: | n/a | chr9:104557402-104557410 chr9:104557400-104557412 chr9:104557401-104557412 |
| 3 | CEBPB | chr9:104557478-104557775 | K562 | blood: | n/a | chr9:104557616-104557627 |
| 4 | CEBPB | chr9:104557439-104557795 | IMR90 | lung: | n/a | chr9:104557616-104557627 |
| 5 | CEBPB | chr9:104557510-104557633 | K562 | blood: | n/a | chr9:104557616-104557627 |
| 6 | FOS | chr9:104557274-104557813 | MCF10A-Er-Src | breast: | n/a | chr9:104557402-104557410 chr9:104557400-104557412 chr9:104557401-104557412 |
| 7 | JUN | chr9:104557518-104557697 | HepG2 | liver: | n/a | chr9:104557635-104557648 |
| 8 | CEBPB | chr9:104557461-104557739 | H1-hESC | embryonic stem cell: | n/a | chr9:104557616-104557627 |
| 9 | STAT3 | chr9:104557443-104557704 | MCF10A-Er-Src | breast: | n/a | n/a |
| 10 | CEBPB | chr9:104557453-104557803 | HepG2 | liver: | n/a | chr9:104557616-104557627 |
| 11 | CEBPB | chr9:104557424-104557737 | A549 | lung: | n/a | chr9:104557616-104557627 |
| 12 | CEBPB | chr9:104557455-104557771 | Hela-S3 | cervix: | n/a | chr9:104557616-104557627 |
| 13 | JUND | chr9:104557471-104557788 | HepG2 | liver: | n/a | n/a |
| 14 | CEBPB | chr9:104557426-104557815 | K562 | blood: | n/a | chr9:104557616-104557627 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MTND3P4 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1046975 | chr9:104167583-104659873 | Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046590 | chr9:104450624-104848588 | Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1046614 | chr9:104492314-104686326 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1054992 | chr9:104494816-104771134 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1043967 | chr9:104498664-104636328 | Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv1048227 | chr9:104546761-105162810 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 7 | nsv893628 | chr9:104555316-104649651 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
