Variant report

Variant	rs57543564
Chromosome Location	chr7:150511878-150511879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10378	0.86[ASN][1000 genomes]
rs17197782	0.86[ASN][1000 genomes]
rs28360734	0.86[ASN][1000 genomes]
rs28508254	0.86[ASN][1000 genomes]
rs28592021	0.86[ASN][1000 genomes]
rs60015854	0.91[AFR][1000 genomes]
rs62490434	0.86[ASN][1000 genomes]
rs62490441	0.86[ASN][1000 genomes]
rs62492366	0.86[ASN][1000 genomes]
rs714883	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150503400-150528000	Weak transcription	Ovary	ovary
2	chr7:150511200-150512000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:150511200-150512400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr7:150511400-150512000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr7:150511400-150512000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr7:150511400-150512200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:150511400-150512400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:150511600-150512000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:150511800-150512000	ZNF genes & repeats	Fetal Stomach	stomach
10	chr7:150511800-150512200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:150511800-150512200	Enhancers	Duodenum Mucosa	Duodenum
12	chr7:150511800-150512400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:150511800-150512400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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