Variant report

Variant	rs714883
Chromosome Location	chr7:150499831-150499832
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150418208..150420407-chr7:150499249..150501046,2	K562	blood:
2	chr7:150490163..150495069-chr7:150496481..150500897,6	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ABP1-3	chr7:150499144-150500920	NONHSAT124157

Variant related genes	Relation type
ENSG00000106565	Chromatin interaction
ENSG00000196329	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10378	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197782	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28360734	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28508254	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28592021	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57543564	0.86[ASN][1000 genomes]
rs62490434	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62490441	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62492366	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs877120	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv831187	chr7:150325913-150503500	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150498600-150500400	Weak transcription	Left Ventricle	heart
2	chr7:150498600-150500800	Weak transcription	Right Atrium	heart
3	chr7:150498800-150501600	Enhancers	Placenta	Placenta
4	chr7:150498800-150502800	Weak transcription	Gastric	stomach
5	chr7:150498800-150503000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:150499200-150500600	Enhancers	Stomach Mucosa	stomach
7	chr7:150499200-150501000	Genic enhancers	Fetal Intestine Large	intestine
8	chr7:150499200-150501200	Transcr. at gene 5' and 3'	Liver	Liver
9	chr7:150499400-150500000	Bivalent Enhancer	Adipose Nuclei	Adipose
10	chr7:150499400-150500600	Enhancers	Small Intestine	intestine
11	chr7:150499400-150501000	Genic enhancers	Fetal Muscle Leg	muscle
12	chr7:150499400-150501000	Enhancers	Right Ventricle	heart
13	chr7:150499400-150501000	Genic enhancers	Sigmoid Colon	Sigmoid Colon
14	chr7:150499400-150503000	Strong transcription	Ovary	ovary
15	chr7:150499600-150501000	Genic enhancers	Fetal Intestine Small	intestine
16	chr7:150499600-150501000	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 31	rectum
17	chr7:150499600-150501800	Weak transcription	Pancreas	Pancrea
18	chr7:150499600-150502800	Weak transcription	Esophagus	oesophagus
19	chr7:150499800-150500000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:150499800-150500000	Genic enhancers	Colonic Mucosa	Colon
21	chr7:150499800-150500000	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr7:150499800-150500000	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
23	chr7:150499800-150500000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
24	chr7:150499800-150500600	Genic enhancers	Duodenum Mucosa	Duodenum
25	chr7:150499800-150500600	Genic enhancers	Fetal Stomach	stomach
26	chr7:150499800-150500800	Genic enhancers	Rectal Smooth Muscle	rectum
27	chr7:150499800-150501400	Transcr. at gene 5' and 3'	Rectal Mucosa Donor 29	rectum
28	chr7:150499800-150501400	Weak transcription	Spleen	Spleen
29	chr7:150499800-150501800	Genic enhancers	Fetal Muscle Trunk	muscle
30	chr7:150499800-150502600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links