Variant report

Variant	rs57555006
Chromosome Location	chr5:126538193-126538194
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10037625	0.84[EUR][1000 genomes]
rs108558	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13178353	0.87[EUR][1000 genomes]
rs173555	0.84[EUR][1000 genomes]
rs1860439	0.84[EUR][1000 genomes]
rs1860441	0.80[EUR][1000 genomes]
rs193712	0.83[EUR][1000 genomes]
rs2109215	0.88[EUR][1000 genomes]
rs2408790	0.88[EUR][1000 genomes]
rs2436437	0.84[EUR][1000 genomes]
rs248042	0.80[EUR][1000 genomes]
rs248062	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs248091	0.82[EUR][1000 genomes]
rs248092	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs248093	0.83[EUR][1000 genomes]
rs248094	0.83[EUR][1000 genomes]
rs248095	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248096	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248101	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs248102	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248105	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs248106	0.82[EUR][1000 genomes]
rs248107	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248108	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248109	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs248111	0.83[EUR][1000 genomes]
rs248112	0.84[EUR][1000 genomes]
rs248113	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs248114	0.84[EUR][1000 genomes]
rs248115	0.84[EUR][1000 genomes]
rs248116	0.81[EUR][1000 genomes]
rs248117	0.83[EUR][1000 genomes]
rs248118	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs248119	0.84[EUR][1000 genomes]
rs248121	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs248122	0.84[EUR][1000 genomes]
rs248124	0.84[EUR][1000 genomes]
rs248125	0.84[EUR][1000 genomes]
rs248126	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs248127	0.84[EUR][1000 genomes]
rs248128	0.84[EUR][1000 genomes]
rs248129	0.84[EUR][1000 genomes]
rs248131	0.84[EUR][1000 genomes]
rs2532882	0.84[EUR][1000 genomes]
rs2585204	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2898037	0.81[EUR][1000 genomes]
rs3095137	0.84[EUR][1000 genomes]
rs3097870	0.84[EUR][1000 genomes]
rs4835925	0.84[EUR][1000 genomes]
rs4836315	0.84[EUR][1000 genomes]
rs6859962	0.88[EUR][1000 genomes]
rs6864668	0.84[EUR][1000 genomes]
rs6879393	0.84[EUR][1000 genomes]
rs6883672	0.89[EUR][1000 genomes]
rs6888087	0.84[EUR][1000 genomes]
rs6894575	0.84[AFR][1000 genomes]
rs6898415	0.84[EUR][1000 genomes]
rs726990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7700812	0.84[EUR][1000 genomes]
rs885699	0.84[EUR][1000 genomes]
rs9327433	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9687751	0.80[EUR][1000 genomes]
rs9687752	0.80[EUR][1000 genomes]
rs9763733	0.82[EUR][1000 genomes]
rs990743	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs57555006	MARCH3	cis	Muscle Skeletal	GTEx
rs57555006	C5orf63	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126529200-126539200	Weak transcription	Muscle Satellite Cultured Cells	--

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