Variant report

Variant	rs9327433
Chromosome Location	chr5:126546059-126546060
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs108558	0.83[EUR][1000 genomes]
rs11241913	0.91[MEX][hapmap]
rs12515192	0.81[MEX][hapmap]
rs12655220	0.86[MEX][hapmap]
rs2041318	0.86[MEX][hapmap]
rs2109215	0.81[CEU][hapmap];0.91[MEX][hapmap]
rs248040	0.87[MEX][hapmap]
rs248062	0.81[EUR][1000 genomes]
rs248105	0.82[EUR][1000 genomes]
rs248107	0.81[CEU][hapmap]
rs248109	0.83[EUR][1000 genomes]
rs248113	0.85[EUR][1000 genomes]
rs248118	0.85[EUR][1000 genomes]
rs248121	0.85[EUR][1000 genomes]
rs248126	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2585204	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57555006	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs726990	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs727038	0.87[MEX][hapmap]
rs7706333	0.81[MEX][hapmap]
rs7731621	0.81[CEU][hapmap]
rs7736693	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9327433	MARCH3	cis	Muscle Skeletal	GTEx
rs9327433	MARCH3	cis	parietal	SCAN
rs9327433	MARCH3	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126544600-126546400	Enhancers	Brain Substantia Nigra	brain
2	chr5:126545200-126546600	Enhancers	Brain Germinal Matrix	brain
3	chr5:126545400-126547200	Enhancers	Brain Hippocampus Middle	brain
4	chr5:126545400-126548200	Weak transcription	Aorta	Aorta
5	chr5:126545600-126546200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:126545600-126546200	Enhancers	Brain Cingulate Gyrus	brain
7	chr5:126545800-126546400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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