Variant report

Variant	rs57556536
Chromosome Location	chr11:59040643-59040644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59032632..59035314-chr11:59038415..59042026,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17153691	1.00[AFR][1000 genomes]
rs57417127	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58090903	1.00[AFR][1000 genomes]
rs59300876	1.00[AFR][1000 genomes]
rs59966846	1.00[AFR][1000 genomes]
rs61001950	1.00[AFR][1000 genomes]
rs7122295	0.80[EUR][1000 genomes]
rs72472134	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72472135	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72472136	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72472137	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72472138	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7929185	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	esv1821250	chr11:58925860-59059179	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv3351601	chr11:58979308-59052763	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3381199	chr11:59015574-59068938	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59037000-59044600	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:59037400-59043400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:59038200-59043000	Enhancers	Primary hematopoietic stem cells	blood
4	chr11:59038600-59042800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:59039000-59041400	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr11:59039000-59041800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:59039200-59040800	Enhancers	Spleen	Spleen
8	chr11:59039600-59041800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:59039600-59041800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr11:59039600-59042000	Enhancers	Primary T cells from cord blood	blood
11	chr11:59039600-59042000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:59039600-59042200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr11:59039800-59041800	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr11:59039800-59042000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr11:59039800-59042800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr11:59040000-59041000	Enhancers	Fetal Intestine Small	intestine
17	chr11:59040000-59041400	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:59040000-59041800	Enhancers	Stomach Mucosa	stomach
19	chr11:59040000-59042200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:59040200-59041000	Enhancers	Colonic Mucosa	Colon
21	chr11:59040200-59041600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr11:59040200-59041600	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:59040200-59041800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr11:59040200-59042000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:59040200-59042000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:59040200-59042200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:59040400-59041000	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr11:59040400-59041000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:59040400-59041000	Enhancers	Duodenum Mucosa	Duodenum
30	chr11:59040400-59041000	Enhancers	Fetal Thymus	thymus
31	chr11:59040400-59041000	Enhancers	Thymus	Thymus
32	chr11:59040400-59041200	Enhancers	Adipose Nuclei	Adipose
33	chr11:59040400-59041800	Enhancers	Small Intestine	intestine
34	chr11:59040400-59042000	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr11:59040400-59042600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr11:59040600-59040800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr11:59040600-59041000	Enhancers	Gastric	stomach
38	chr11:59040600-59041000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
39	chr11:59040600-59041200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood

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