Variant report

Variant	rs17153691
Chromosome Location	chr11:59190120-59190121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17153714	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153751	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1955200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57556536	1.00[AFR][1000 genomes]
rs58090903	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59300876	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs59966846	1.00[AFR][1000 genomes]
rs61001950	1.00[AFR][1000 genomes]
rs61381338	0.86[EUR][1000 genomes]
rs61419052	0.82[EUR][1000 genomes]
rs72472134	1.00[AFR][1000 genomes]
rs72472135	1.00[AFR][1000 genomes]
rs72472137	1.00[AFR][1000 genomes]
rs72472138	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59187400-59191200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:59189600-59190600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:59189800-59190200	Enhancers	Spleen	Spleen
4	chr11:59190000-59190400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:59190000-59190600	Enhancers	Primary B cells from peripheral blood	blood
6	chr11:59190000-59190600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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