Variant report

Variant	rs61381338
Chromosome Location	chr11:59185329-59185330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17153691	0.86[EUR][1000 genomes]
rs17153714	0.86[EUR][1000 genomes]
rs17153751	0.82[EUR][1000 genomes]
rs1955199	0.86[EUR][1000 genomes]
rs1955200	0.86[EUR][1000 genomes]
rs58090903	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59300876	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59966846	0.88[ASN][1000 genomes]
rs61001950	0.88[ASN][1000 genomes]
rs72472137	0.84[ASN][1000 genomes]
rs72472138	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046084	chr11:59034871-59314519	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1047952	chr11:59124719-59221606	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59182400-59186000	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:59182800-59187200	Enhancers	Fetal Brain Male	brain
3	chr11:59184200-59185800	Enhancers	Thymus	Thymus
4	chr11:59184800-59185800	Enhancers	Primary T cells from cord blood	blood
5	chr11:59184800-59185800	Enhancers	Brain Germinal Matrix	brain
6	chr11:59185000-59185600	Enhancers	Primary B cells from cord blood	blood
7	chr11:59185000-59186800	Enhancers	Fetal Brain Female	brain
8	chr11:59185200-59185400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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