Variant report

Variant	rs57557208
Chromosome Location	chr8:35627940-35627941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56114419	0.82[AFR][1000 genomes]
rs56808431	0.83[AFR][1000 genomes]
rs56860408	0.85[AFR][1000 genomes]
rs57176697	0.96[AFR][1000 genomes]
rs61113233	0.82[AFR][1000 genomes]
rs73578265	0.86[AFR][1000 genomes]
rs73578267	0.83[AFR][1000 genomes]
rs73578270	0.85[AFR][1000 genomes]
rs73578285	0.83[AFR][1000 genomes]
rs73586705	0.82[AFR][1000 genomes]
rs73586719	0.82[AFR][1000 genomes]
rs73673924	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2754662	chr8:35558658-35648958	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35576000-35631600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr8:35582000-35640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:35610600-35631800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:35612200-35633200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:35619200-35640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:35619400-35632600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:35619400-35636800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:35619600-35629200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:35620000-35635000	Weak transcription	Fetal Kidney	kidney
10	chr8:35620800-35635200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:35625000-35631600	Weak transcription	Fetal Brain Female	brain
12	chr8:35625000-35631800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:35625000-35633000	Weak transcription	Fetal Brain Male	brain
14	chr8:35625400-35631600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:35625400-35631800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:35626400-35631800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr8:35627000-35640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:35627200-35629600	Weak transcription	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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