Variant report

Variant	rs575574279
Chromosome Location	chr6:36916014-36916015
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HMGN3	chr6:36915995-36916015	K562	blood:	n/a	n/a
2	EBF1	chr6:36915949-36916100	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36915747..36919680-chr6:36919787..36923449,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTCH1-1	chr6:36915528-36916894	ucscGeneNc_uc003omt_1

Variant related genes	Relation type
ENSG00000232598	TF binding region
ENSG00000164530	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv519499	chr6:36915906-36924102	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv522653	chr6:36915906-36925774	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv885815	chr6:36915906-36979583	Active TSS Flanking Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
2	chr6:36913200-36917000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:36914200-36916600	Enhancers	Primary T cells from cord blood	blood
4	chr6:36914200-36916600	Enhancers	Dnd41	blood
5	chr6:36914200-36916800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr6:36914400-36916200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:36914400-36916200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:36914400-36916400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:36914400-36917200	Enhancers	Primary T cells fromperipheralblood	blood
11	chr6:36915000-36916200	Enhancers	Brain Hippocampus Middle	brain
12	chr6:36915000-36916400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:36915000-36916600	Enhancers	Primary B cells from cord blood	blood
14	chr6:36915200-36916200	Enhancers	Brain Anterior Caudate	brain
15	chr6:36915200-36916400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:36915200-36917000	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:36915400-36916200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:36915400-36916200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:36915400-36916200	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr6:36915400-36916200	Enhancers	HMEC	breast
21	chr6:36915400-36917800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:36915400-36918000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:36915600-36916200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:36915600-36916200	Enhancers	Pancreas	Pancrea
25	chr6:36915600-36916400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:36915600-36917200	Weak transcription	NHEK	skin
27	chr6:36915800-36916200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:36915800-36916200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr6:36915800-36916200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr6:36915800-36916200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr6:36915800-36916200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr6:36915800-36916200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:36915800-36916200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36915800-36916200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:36915800-36916200	Flanking Active TSS	Thymus	Thymus
36	chr6:36915800-36916400	Enhancers	Primary hematopoietic stem cells	blood
37	chr6:36915800-36916400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:36915800-36917000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:36915800-36918000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr6:36916000-36916200	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:36916000-36916200	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:36916000-36916200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr6:36916000-36916200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
44	chr6:36916000-36916200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:36916000-36916200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr6:36916000-36916200	Active TSS	Brain Inferior Temporal Lobe	brain
47	chr6:36916000-36916400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:36916000-36916400	Flanking Active TSS	Fetal Thymus	thymus
49	chr6:36916000-36917000	Weak transcription	Brain Substantia Nigra	brain
50	chr6:36916000-36917000	Weak transcription	HUVEC	blood vessel

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