Variant report

Variant	rs57559713
Chromosome Location	chr15:34311330-34311331
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55725402	0.87[AFR][1000 genomes]
rs56167847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57123247	1.00[AMR][1000 genomes]
rs58385931	0.85[AMR][1000 genomes]
rs59075648	1.00[AMR][1000 genomes]
rs59210484	1.00[AMR][1000 genomes]
rs59828550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60885608	0.85[AMR][1000 genomes]
rs653404	0.85[AMR][1000 genomes]
rs74007650	1.00[AMR][1000 genomes]
rs74007653	1.00[AMR][1000 genomes]
rs74007655	1.00[AMR][1000 genomes]
rs74007656	1.00[AMR][1000 genomes]
rs74007657	1.00[AMR][1000 genomes]
rs74007663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74007670	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74007676	1.00[AMR][1000 genomes]
rs74007678	1.00[AMR][1000 genomes]
rs74007683	1.00[AMR][1000 genomes]
rs74007687	1.00[AMR][1000 genomes]
rs74007688	1.00[AMR][1000 genomes]
rs74007690	1.00[AMR][1000 genomes]
rs74007691	1.00[AMR][1000 genomes]
rs74007692	1.00[AMR][1000 genomes]
rs74007693	1.00[AMR][1000 genomes]
rs74007694	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34265400-34311800	Weak transcription	Liver	Liver
2	chr15:34292000-34315000	Weak transcription	Aorta	Aorta
3	chr15:34294800-34315600	Weak transcription	Left Ventricle	heart
4	chr15:34304200-34319800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:34305000-34314000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:34306600-34314400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr15:34308200-34312400	Weak transcription	HSMMtube	muscle
8	chr15:34309000-34317400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:34309200-34314200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:34309400-34311600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:34309400-34316000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:34309400-34330000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:34309600-34312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:34309600-34330000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:34310000-34311400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:34310000-34312200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr15:34310400-34311400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:34310400-34311400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr15:34310400-34311400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:34310600-34315800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr15:34310800-34312600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:34310800-34315800	Weak transcription	Fetal Stomach	stomach
23	chr15:34311000-34311800	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr15:34311000-34318600	Weak transcription	Primary T cells from cord blood	blood
25	chr15:34311200-34315000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:34311200-34315800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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