Variant report

Variant	rs74007670
Chromosome Location	chr15:34332422-34332423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:34330437-34332751	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:34330319-34332548	GM12891	blood:	n/a	n/a
3	POLR2A	chr15:34330080-34333046	MCF10A-Er-Src	breast:	n/a	n/a
4	MXI1	chr15:34329925-34332895	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34330030..34332710-chr15:35259474..35262090,2	MCF-7	breast:
2	chr15:34329770..34332450-chr15:34500868..34502911,3	K562	blood:
3	chr15:34330950..34333091-chr15:34501411..34503652,2	K562	blood:

Variant related genes	Relation type
AVEN	TF binding region
ENSG00000134152	Chromatin interaction
ENSG00000021776	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55725402	0.93[AFR][1000 genomes]
rs56167847	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57123247	1.00[AMR][1000 genomes]
rs57559713	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58385931	0.85[AMR][1000 genomes]
rs59075648	1.00[AMR][1000 genomes]
rs59210484	1.00[AMR][1000 genomes]
rs59828550	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60885608	0.85[AMR][1000 genomes]
rs653404	0.85[AMR][1000 genomes]
rs74007650	1.00[AMR][1000 genomes]
rs74007653	1.00[AMR][1000 genomes]
rs74007655	1.00[AMR][1000 genomes]
rs74007656	1.00[AMR][1000 genomes]
rs74007657	1.00[AMR][1000 genomes]
rs74007663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74007676	1.00[AMR][1000 genomes]
rs74007678	1.00[AMR][1000 genomes]
rs74007683	1.00[AMR][1000 genomes]
rs74007687	1.00[AMR][1000 genomes]
rs74007688	1.00[AMR][1000 genomes]
rs74007690	1.00[AMR][1000 genomes]
rs74007691	1.00[AMR][1000 genomes]
rs74007692	1.00[AMR][1000 genomes]
rs74007693	1.00[AMR][1000 genomes]
rs74007694	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv903985	chr15:34279319-34370487	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34331400-34332600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:34331600-34332600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr15:34331600-34332600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:34331600-34332800	Flanking Active TSS	GM12878-XiMat	blood
5	chr15:34331800-34332600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:34332000-34332600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr15:34332000-34332600	Enhancers	Primary B cells from peripheral blood	blood
8	chr15:34332000-34332600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr15:34332000-34332800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr15:34332000-34332800	Enhancers	Fetal Intestine Small	intestine
11	chr15:34332000-34332800	Enhancers	Fetal Kidney	kidney
12	chr15:34332000-34333000	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:34332000-34339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:34332200-34332600	Enhancers	Primary B cells from cord blood	blood
15	chr15:34332200-34332600	Enhancers	Primary T cells from cord blood	blood
16	chr15:34332200-34332600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:34332200-34332600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:34332200-34332600	Enhancers	Fetal Thymus	thymus
19	chr15:34332200-34332600	Enhancers	Dnd41	blood
20	chr15:34332200-34332800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr15:34332200-34332800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:34332200-34332800	Enhancers	NH-A	brain
23	chr15:34332200-34332800	Enhancers	NHLF	lung
24	chr15:34332200-34333000	Enhancers	Fetal Intestine Large	intestine
25	chr15:34332200-34333800	Enhancers	Fetal Heart	heart
26	chr15:34332200-34337400	Weak transcription	HSMM	muscle
27	chr15:34332200-34339400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:34332400-34332600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr15:34332400-34332800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr15:34332400-34332800	Enhancers	Duodenum Mucosa	Duodenum
31	chr15:34332400-34332800	Enhancers	HepG2	liver
32	chr15:34332400-34333600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:34332400-34335600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr15:34332400-34335600	Weak transcription	Osteobl	bone
35	chr15:34332400-34335800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:34332400-34337400	Weak transcription	HSMMtube	muscle
37	chr15:34332400-34337600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:34332400-34337600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr15:34332400-34338000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links